Click here to switch to the map view.

The map label for this gene is ltrA [H]

Identifier: 161523603

GI number: 161523603

Start: 463417

End: 464343

Strand: Reverse

Name: ltrA [H]

Synonym: Bmul_0423

Alternate gene names: 161523603

Gene position: 464343-463417 (Counterclockwise)

Preceding gene: 161523613

Following gene: 161523602

Centisome position: 13.47

GC content: 68.07

Gene sequence:

>927_bases
ATGGACTTGAACGCGCTGACGCTGCTCGTCGAGATCCTCGACGCCGGCAATCTGAGCAAGGCCGCGCAGCGGCTGAAGAT
GAGCCGCGCGAACGTCAGCTATCGGCTCAACCAGCTCGAGCGCTCGATCGGTCAGCAGCTCGTACGGCGCACGACGCGGC
GCATCGAGCCCACCGAGATCGGGCTGAAGCTGTACGAGCACGGCCGGCGCATCCGCAACGAACTGCTCGCCGCGCAGGAA
TCGGTGACGACGCTCGGGCAGGACCTGCAGGGCCGCGTGCGGCTGTCGGTACCGAGCGGCTACGGGCAGATGGTGATGGC
CGACTGGCTGCTCGCGTTCAAGCGGCTGCATCCGGGCATCGTGCTCGACGTCGTGTTCGAGAACCGCGTCGAGGATCTGA
TGCGCGACGAGATCGACATCGCGGTGCGCGTGATGCCCGAGCCGCCGCCGAATCTCGTCGCGCGCGACATGGGCGCGGTG
CGCTACGTCGCCTGCGCGTCGGCCGCCTACGCGGCCGCGCACGGGATGCCGGCGAGCCTCGACGCGCTGTCGGCCGGCCC
GGTCGTCACCGCGACGGTGATGGGCCGGCAGTTGCGCATTGCCGCGTATCTCGGCGACGAACGTCACGAGGTGCTGCTCG
AGCCGACGCTGGTATCGGAGAACTTCCTGTTCCTGCGCCAGGCGATCCTCGCCGGCATCGGCGTCGGCATCGTGCCCGAC
TACGTCGTGCAGGACGACATGCGGCGCGGCGCCATCGTCACGTCGCTCGACGCGTATCGGCTCAGCATCTTCGGCACGCA
CATGTACATGCTCTACATGCCGAACCGTCATCACACGCGCGCGACCTCGACCTTCATAGAGTTCATCCTCGAACAGGCCG
GAAAGACCGGCCGGCGCGGGCCCGACGCGCTGCGTCAGGGTTCCTGA

Upstream 100 bases:

>100_bases
AGATTCATTGACAATTCCAGCGAGCTTTTACAAGCTGTCAAGTCTGACTTGACATTGAACGTTTGCCGGCCCGTGTGCGA
GCCGGTACGGAGACGCCCGG

Downstream 100 bases:

>100_bases
CGGATGACAATCGGCGCGCCGCGCGGCGACAATAGCGCGCCCGCCGCCTCCTTCGACTTCATTGCTGCAGAGGGTTCCAT
GTTCGACCGGCTTCGTCCGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MDLNALTLLVEILDAGNLSKAAQRLKMSRANVSYRLNQLERSIGQQLVRRTTRRIEPTEIGLKLYEHGRRIRNELLAAQE
SVTTLGQDLQGRVRLSVPSGYGQMVMADWLLAFKRLHPGIVLDVVFENRVEDLMRDEIDIAVRVMPEPPPNLVARDMGAV
RYVACASAAYAAAHGMPASLDALSAGPVVTATVMGRQLRIAAYLGDERHEVLLEPTLVSENFLFLRQAILAGIGVGIVPD
YVVQDDMRRGAIVTSLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIEFILEQAGKTGRRGPDALRQGS

Sequences:

>Translated_308_residues
MDLNALTLLVEILDAGNLSKAAQRLKMSRANVSYRLNQLERSIGQQLVRRTTRRIEPTEIGLKLYEHGRRIRNELLAAQE
SVTTLGQDLQGRVRLSVPSGYGQMVMADWLLAFKRLHPGIVLDVVFENRVEDLMRDEIDIAVRVMPEPPPNLVARDMGAV
RYVACASAAYAAAHGMPASLDALSAGPVVTATVMGRQLRIAAYLGDERHEVLLEPTLVSENFLFLRQAILAGIGVGIVPD
YVVQDDMRRGAIVTSLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIEFILEQAGKTGRRGPDALRQGS
>Mature_308_residues
MDLNALTLLVEILDAGNLSKAAQRLKMSRANVSYRLNQLERSIGQQLVRRTTRRIEPTEIGLKLYEHGRRIRNELLAAQE
SVTTLGQDLQGRVRLSVPSGYGQMVMADWLLAFKRLHPGIVLDVVFENRVEDLMRDEIDIAVRVMPEPPPNLVARDMGAV
RYVACASAAYAAAHGMPASLDALSAGPVVTATVMGRQLRIAAYLGDERHEVLLEPTLVSENFLFLRQAILAGIGVGIVPD
YVVQDDMRRGAIVTSLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIEFILEQAGKTGRRGPDALRQGS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=292, Percent_Identity=26.7123287671233, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI87081978, Length=258, Percent_Identity=28.6821705426357, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1789639, Length=259, Percent_Identity=25.0965250965251, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1789440, Length=287, Percent_Identity=24.7386759581882, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786401, Length=289, Percent_Identity=24.5674740484429, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1787589, Length=285, Percent_Identity=22.4561403508772, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788297, Length=147, Percent_Identity=32.6530612244898, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1786508, Length=253, Percent_Identity=25.6916996047431, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34207; Mature: 34207

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLNALTLLVEILDAGNLSKAAQRLKMSRANVSYRLNQLERSIGQQLVRRTTRRIEPTEI
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
GLKLYEHGRRIRNELLAAQESVTTLGQDLQGRVRLSVPSGYGQMVMADWLLAFKRLHPGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCE
VLDVVFENRVEDLMRDEIDIAVRVMPEPPPNLVARDMGAVRYVACASAAYAAAHGMPASL
EEEHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DALSAGPVVTATVMGRQLRIAAYLGDERHEVLLEPTLVSENFLFLRQAILAGIGVGIVPD
HHCCCCCEEEHHHCCCEEEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCC
YVVQDDMRRGAIVTSLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIEFILEQAGKTGRRG
HHHHHHHHCCCEEEEHHHHHEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCC
PDALRQGS
CHHHCCCC
>Mature Secondary Structure
MDLNALTLLVEILDAGNLSKAAQRLKMSRANVSYRLNQLERSIGQQLVRRTTRRIEPTEI
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
GLKLYEHGRRIRNELLAAQESVTTLGQDLQGRVRLSVPSGYGQMVMADWLLAFKRLHPGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCE
VLDVVFENRVEDLMRDEIDIAVRVMPEPPPNLVARDMGAVRYVACASAAYAAAHGMPASL
EEEHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DALSAGPVVTATVMGRQLRIAAYLGDERHEVLLEPTLVSENFLFLRQAILAGIGVGIVPD
HHCCCCCEEEHHHCCCEEEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCC
YVVQDDMRRGAIVTSLDAYRLSIFGTHMYMLYMPNRHHTRATSTFIEFILEQAGKTGRRG
HHHHHHHHCCCEEEEHHHHHEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCC
PDALRQGS
CHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]