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The map label for this gene is rplY [H]

Identifier: 161511075

GI number: 161511075

Start: 823263

End: 823811

Strand: Direct

Name: rplY [H]

Synonym: BB0786

Alternate gene names: 161511075

Gene position: 823263-823811 (Clockwise)

Preceding gene: 15595130

Following gene: 15595132

Centisome position: 90.4

GC content: 34.43

Gene sequence:

>549_bases
GTGGAAAATAGCAGGGTTTTAAGTTGCCAATATAGATCAAGCTTTGGATCTTCTAATGCTCGCAGAATAAGAGCTAAGTC
TGAAATACCAGCTGTTGTTTACGGGCAAGGTAAGGATGTTTCACACTTGAGAATTAAGAGTAGTGAATTTAATAAGAAAT
TTGCAAAATTTACGGATAATACTGTCTTAATATTAGATGATGGCAAGCTTGAAAGATGTGTTTTTGTTAAAGATGCTGCA
GAAAATATTGCCAGCAAGCTCATTTATCATATTGATTTTTACGAAGTAGATAGGAATGTTGAGCTTGAAAAATATGTTCC
TATTAAGCTTATTGGAGCTTCTATTGGGGTTAAAGAAGGTGGAATTTTGACTGTTTTAAAAGAGCAGGTTAAGGTAAGGT
CTTTGCCCTTGGATTTGCCAGAATTCATAGAGCTTGATTTAACTCCTGTTAATAAAGGAGATAGCGTTCTTCTTAAAGAT
CTTGTGTTGCCTTCTAATGTTAGGCTTGCAGAAAATGACGAGAATTTGGAAGTTGTTATTATAAAGTGA

Upstream 100 bases:

>100_bases
GTATTTGGGACGTCGACAAGTGGTAAGTCAACTGGTTTTGGTCCAGTCATTCGAGGGTTCGAATCCTTCCGTCCCAGTAT
TTTACATTAGGAGTTTTTTG

Downstream 100 bases:

>100_bases
TTTTATGGGGTTGTTGATACTTGGATTAGGAAACCCTGGATTAGAATTTTCTTTAACTAGGCATAATGTTGGTTTTTCTC
TTTTGGATAAAATTGTTTCT

Product: 50S ribosomal protein L25/general stress protein Ctc

Products: NA

Alternate protein names: General stress protein CTC [H]

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MENSRVLSCQYRSSFGSSNARRIRAKSEIPAVVYGQGKDVSHLRIKSSEFNKKFAKFTDNTVLILDDGKLERCVFVKDAA
ENIASKLIYHIDFYEVDRNVELEKYVPIKLIGASIGVKEGGILTVLKEQVKVRSLPLDLPEFIELDLTPVNKGDSVLLKD
LVLPSNVRLAENDENLEVVIIK

Sequences:

>Translated_182_residues
MENSRVLSCQYRSSFGSSNARRIRAKSEIPAVVYGQGKDVSHLRIKSSEFNKKFAKFTDNTVLILDDGKLERCVFVKDAA
ENIASKLIYHIDFYEVDRNVELEKYVPIKLIGASIGVKEGGILTVLKEQVKVRSLPLDLPEFIELDLTPVNKGDSVLLKD
LVLPSNVRLAENDENLEVVIIK
>Mature_182_residues
MENSRVLSCQYRSSFGSSNARRIRAKSEIPAVVYGQGKDVSHLRIKSSEFNKKFAKFTDNTVLILDDGKLERCVFVKDAA
ENIASKLIYHIDFYEVDRNVELEKYVPIKLIGASIGVKEGGILTVLKEQVKVRSLPLDLPEFIELDLTPVNKGDSVLLKD
LVLPSNVRLAENDENLEVVIIK

Specific function: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance [H]

COG id: COG1825

COG function: function code J; Ribosomal protein L25 (general stress protein Ctc)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L25P family. Ctc subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020056
- InterPro:   IPR011035
- InterPro:   IPR020057
- InterPro:   IPR001021
- InterPro:   IPR020055
- ProDom:   PD012503 [H]

Pfam domain/function: PF01386 Ribosomal_L25p [H]

EC number: NA

Molecular weight: Translated: 20450; Mature: 20450

Theoretical pI: Translated: 7.41; Mature: 7.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENSRVLSCQYRSSFGSSNARRIRAKSEIPAVVYGQGKDVSHLRIKSSEFNKKFAKFTDN
CCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEECCCCCEEEEEECCHHHHHHHHCCCC
TVLILDDGKLERCVFVKDAAENIASKLIYHIDFYEVDRNVELEKYVPIKLIGASIGVKEG
EEEEEECCCCCEEEEEHHHHHHHHHHHEEEEEEEECCCCCEEEEECCEEEEEEECCCCCC
GILTVLKEQVKVRSLPLDLPEFIELDLTPVNKGDSVLLKDLVLPSNVRLAENDENLEVVI
CEEEEEHHHHHHCCCCCCCHHHEEEEEEECCCCCCEEEEEEECCCCCEEECCCCCEEEEE
IK
EC
>Mature Secondary Structure
MENSRVLSCQYRSSFGSSNARRIRAKSEIPAVVYGQGKDVSHLRIKSSEFNKKFAKFTDN
CCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEECCCCCEEEEEECCHHHHHHHHCCCC
TVLILDDGKLERCVFVKDAAENIASKLIYHIDFYEVDRNVELEKYVPIKLIGASIGVKEG
EEEEEECCCCCEEEEEHHHHHHHHHHHEEEEEEEECCCCCEEEEECCEEEEEEECCCCCC
GILTVLKEQVKVRSLPLDLPEFIELDLTPVNKGDSVLLKDLVLPSNVRLAENDENLEVVI
CEEEEEHHHHHHCCCCCCCHHHEEEEEEECCCCCCEEEEEEECCCCCEEECCCCCEEEEE
IK
EC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9403685 [H]