Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
---|---|
Accession | NC_003919 |
Length | 5,175,554 |
Click here to switch to the map view.
The map label for this gene is bcsZ [H]
Identifier: 161485707
GI number: 161485707
Start: 4156622
End: 4157803
Strand: Reverse
Name: bcsZ [H]
Synonym: XAC3516
Alternate gene names: 161485707
Gene position: 4157803-4156622 (Counterclockwise)
Preceding gene: 161485704
Following gene: 21244240
Centisome position: 80.34
GC content: 69.46
Gene sequence:
>1182_bases ATGAGCGCGCACGCACATACCGGTGGCATGACGCGCCGTCGCCTGCTGCATGCAGGCACATTGGCGGGCGTGGCCGCGCT GCTGCCGGCAGCCGCGCTGGCGGCGCCCAGCCAGTGCGGGCCGTGGCCGCTGTGGAGCGCCTTCGTCGACAAGCACATCC AGCGCGATGGGCGGGTGGTGGATTTTCTCAATCCCGATCAACGCTCCACCTCGGAAGGGCAGTCGTATGCGCTGTTCTTC GCCCTGGTCAACAACGATCAGGTGCTGTTCGACAAGGTGCTGAGCTGGACCCGCCACAACCTGTGCGGCGGCCGCCCGGA TCTCAACCTGCCGGCATGGCTGTGGGGCCGCGATGGCAGCGGCGCCTGGCGCGTGCTGGACGCCAACACCGCCAGCGATG GCGAGTTGTGGATTGCCTATGCGCTGCTGGAAGCCGGCAGGTTGTGGAGCCGCCCGGGCTTTCTCAAGGCCGGCCAGCAG ATGCTGCAGCTGATCCGCACGCAGGAAGTGGCCACGCTGCCCGGGTTGGGCCCGATGCTGCTGCCGGGCCGCACCGGCTT CGTCGACAACGGGCGCTGGACGCTCAATCCCAGCTATCTACCCATCCAGGTGCTGCGTCGTTGCGCCAACGCCGACCCCA AGGGCCCATGGGCCGCCATCGCCGCCAACAGCGCGCGCGTGCTGCGCGACAGTGCGCCGGTGGGGTTTGCCCCGGATTGG ACGGTGTGGGACGGCAAGACCTTCAATGCCGATCCCAAGCGCGGCAATGTGGGCAGTTACGACGCCATCCGCGTGTACCT GTGGGCCGGCATGCTGGACGCTGGCGAGCCGCTGCGCGCGCGGTTGCTGCAGGACCTGTCCGGACCGGCCGACCTGCTCG CCGCGCAGCAGACGCCGGCCGAAAAGATCGACACCGCGCGTGGTGTGGGCACCGGCGCGCTGCCGGTGGGATTTTCTGCG GCGTTGTTGCCGTACCTGAGCGCGCTGGGCAAGCCCGCGCTGCTCAAGGCGCAGGCGCAGCGGGTGCCCGCCGCCACGCA GCCGGCCGCCGCTGCCTTGCCGTATTTCGAACGCACGCTGGCCCTGTTCGGACAGGGATGGCTTGAGAACCGCTACCGCT TCGCCGCAGACGGGCGCCTGTTGCCCGCCTGGAGAACCCCTGCATGCGCCGCAACGACCTGA
Upstream 100 bases:
>100_bases TGGCCTTCACCGTGGTGCTGCTGGCGCTGTTGCTGGCCTTGGCTGCACGCGTGCTGCTGCGCAGGCGCACCGCCGAGCGG CTCAACGACGGTGGCGGCGC
Downstream 100 bases:
>100_bases AGCCGTTCTACCTCGCCGGCATGCTGGAGCTGTGCCTGCTCGCCGCACCGGCAGCGCATGCGCAGACCAGCGCCACCCGG CAGCTGGTGGAACAGGGCAA
Product: endo-1,4-D-glucanase
Products: NA
Alternate protein names: Carboxymethylcellulase; CMCase; Cellulase; Endo-1,4-beta-glucanase [H]
Number of amino acids: Translated: 393; Mature: 392
Protein sequence:
>393_residues MSAHAHTGGMTRRRLLHAGTLAGVAALLPAAALAAPSQCGPWPLWSAFVDKHIQRDGRVVDFLNPDQRSTSEGQSYALFF ALVNNDQVLFDKVLSWTRHNLCGGRPDLNLPAWLWGRDGSGAWRVLDANTASDGELWIAYALLEAGRLWSRPGFLKAGQQ MLQLIRTQEVATLPGLGPMLLPGRTGFVDNGRWTLNPSYLPIQVLRRCANADPKGPWAAIAANSARVLRDSAPVGFAPDW TVWDGKTFNADPKRGNVGSYDAIRVYLWAGMLDAGEPLRARLLQDLSGPADLLAAQQTPAEKIDTARGVGTGALPVGFSA ALLPYLSALGKPALLKAQAQRVPAATQPAAAALPYFERTLALFGQGWLENRYRFAADGRLLPAWRTPACAATT
Sequences:
>Translated_393_residues MSAHAHTGGMTRRRLLHAGTLAGVAALLPAAALAAPSQCGPWPLWSAFVDKHIQRDGRVVDFLNPDQRSTSEGQSYALFF ALVNNDQVLFDKVLSWTRHNLCGGRPDLNLPAWLWGRDGSGAWRVLDANTASDGELWIAYALLEAGRLWSRPGFLKAGQQ MLQLIRTQEVATLPGLGPMLLPGRTGFVDNGRWTLNPSYLPIQVLRRCANADPKGPWAAIAANSARVLRDSAPVGFAPDW TVWDGKTFNADPKRGNVGSYDAIRVYLWAGMLDAGEPLRARLLQDLSGPADLLAAQQTPAEKIDTARGVGTGALPVGFSA ALLPYLSALGKPALLKAQAQRVPAATQPAAAALPYFERTLALFGQGWLENRYRFAADGRLLPAWRTPACAATT >Mature_392_residues SAHAHTGGMTRRRLLHAGTLAGVAALLPAAALAAPSQCGPWPLWSAFVDKHIQRDGRVVDFLNPDQRSTSEGQSYALFFA LVNNDQVLFDKVLSWTRHNLCGGRPDLNLPAWLWGRDGSGAWRVLDANTASDGELWIAYALLEAGRLWSRPGFLKAGQQM LQLIRTQEVATLPGLGPMLLPGRTGFVDNGRWTLNPSYLPIQVLRRCANADPKGPWAAIAANSARVLRDSAPVGFAPDWT VWDGKTFNADPKRGNVGSYDAIRVYLWAGMLDAGEPLRARLLQDLSGPADLLAAQQTPAEKIDTARGVGTGALPVGFSAA LLPYLSALGKPALLKAQAQRVPAATQPAAAALPYFERTLALFGQGWLENRYRFAADGRLLPAWRTPACAATT
Specific function: Hydrolyzes carboxymethylcellulose [H]
COG id: COG3405
COG function: function code G; Endoglucanase Y
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 8 (cellulase D) family [H]
Homologues:
Organism=Escherichia coli, GI1789951, Length=367, Percent_Identity=42.2343324250681, Blast_Score=294, Evalue=7e-81,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008928 - InterPro: IPR012341 - InterPro: IPR002037 - InterPro: IPR006311 [H]
Pfam domain/function: PF01270 Glyco_hydro_8 [H]
EC number: =3.2.1.4 [H]
Molecular weight: Translated: 42360; Mature: 42229
Theoretical pI: Translated: 9.90; Mature: 9.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAHAHTGGMTRRRLLHAGTLAGVAALLPAAALAAPSQCGPWPLWSAFVDKHIQRDGRVV CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEE DFLNPDQRSTSEGQSYALFFALVNNDQVLFDKVLSWTRHNLCGGRPDLNLPAWLWGRDGS ECCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCC GAWRVLDANTASDGELWIAYALLEAGRLWSRPGFLKAGQQMLQLIRTQEVATLPGLGPML CEEEEEECCCCCCCCEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEE LPGRTGFVDNGRWTLNPSYLPIQVLRRCANADPKGPWAAIAANSARVLRDSAPVGFAPDW CCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEEEEECCCHHHHHCCCCCCCCCCC TVWDGKTFNADPKRGNVGSYDAIRVYLWAGMLDAGEPLRARLLQDLSGPADLLAAQQTPA EEECCCCCCCCCCCCCCCCHHHEEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCH EKIDTARGVGTGALPVGFSAALLPYLSALGKPALLKAQAQRVPAATQPAAAALPYFERTL HHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH ALFGQGWLENRYRFAADGRLLPAWRTPACAATT HHHCCHHHHCCEEEEECCEECCCCCCCCCCCCC >Mature Secondary Structure SAHAHTGGMTRRRLLHAGTLAGVAALLPAAALAAPSQCGPWPLWSAFVDKHIQRDGRVV CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEE DFLNPDQRSTSEGQSYALFFALVNNDQVLFDKVLSWTRHNLCGGRPDLNLPAWLWGRDGS ECCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCC GAWRVLDANTASDGELWIAYALLEAGRLWSRPGFLKAGQQMLQLIRTQEVATLPGLGPML CEEEEEECCCCCCCCEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEE LPGRTGFVDNGRWTLNPSYLPIQVLRRCANADPKGPWAAIAANSARVLRDSAPVGFAPDW CCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCEEEEECCCHHHHHCCCCCCCCCCC TVWDGKTFNADPKRGNVGSYDAIRVYLWAGMLDAGEPLRARLLQDLSGPADLLAAQQTPA EEECCCCCCCCCCCCCCCCHHHEEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHCCCCCH EKIDTARGVGTGALPVGFSAALLPYLSALGKPALLKAQAQRVPAATQPAAAALPYFERTL HHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH ALFGQGWLENRYRFAADGRLLPAWRTPACAATT HHHCCHHHHCCEEEEECCEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12024217 [H]