Definition | Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequence. |
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Accession | NC_003065 |
Length | 214,233 |
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The map label for this gene is 16119908
Identifier: 16119908
GI number: 16119908
Start: 114961
End: 116079
Strand: Direct
Name: 16119908
Synonym: Atu6094
Alternate gene names: NA
Gene position: 114961-116079 (Clockwise)
Preceding gene: 16119907
Following gene: 159161972
Centisome position: 53.66
GC content: 50.76
Gene sequence:
>1119_bases ATGATACGCGCTTTCAAATCGTCGTCGAACTCAACCGAAATTATCAACCTCGACAGGGATGCCATCCGAGAAAACCATCG GAATGGTCGACAAACCAATATTATGTTCGACACCAATATCCTGATTGCAATCGAAAGCGCCTATAAGACTGGCCAGCGAC ACCAGGAACTTAAGAATGCTGGTGTTCTGGAACTGGCGAGACTCATCGAGAAAACCTCCAAGTATGGCGTATTCATCTCG CCCGCAGCGGCTTACCAAGAACTGCCCCCAGCGCGTCGAGGCGACGTTGAAGCAGCGTTCGACAGTTTTCTTGCAGACTA TCTGCCAAATTTCCGCGAGGACCCAAACTCGATAAAGGTTCCGTATGCTGGTGGAAAGATGGACCCTGAGCATTTTAGCG CGCTGTCGCTAGAGCGTCAGAAGGCAATCTCGTGCTCATATGCTTCGCTGCTCGCTATGAACGTCATACATCGATTAGAG GCGTTGAATGGCCTGGAAAAATTCGCCCTCTACATCGATTATTGCGCCGAGGTACTGGATCTCATCAGTCTCAAGGAACT GACGATCGCTCGATATGTCTTCGCCCCCGAAAATGGCTTAACTGACCAACTCAGGACGCGGAAAGTAGCTATCACAAACA ACTTCGTGAAACTGAAAAAGGGTGGCGGCAAAGGCTTGACACCCGTCAAAGTACTGGAGCGCATCGCTTTGAATGGAGCC AACGACCTGAAGCTGATTGCTGCTGCAGATATCGTGAACAATTCGCGCGAGCAGTTCAACTTCGGGATCATCGAGCATGA TGTCTGGATCGCAACGAGCGACGATAAGCTCTACGAGTTTTGCTGCGCCTGCCCGGGCTACATGGGTCGGGAACGTGGCG GTCCCCTGGCTAGATATGTCGAGACACATACTGACATAAAGGGAACCCGCTACTGGCGGGATTCCATCGAAATACAGCAG CGCAGACTTGAGGAGCGCTATTTCACAGTAGATCGCGAAAAGGAAATGGACTCAATTGTGCAGTCAGCCTTTGATATCGA GGCTGACCTGCTGAACGGTAAAGCTGACGATTATTTCAGACTAAGGTCATGGCGATCTGCGCGAGTGATGCATGACTAA
Upstream 100 bases:
>100_bases CAGATTATTATACAGGAGAGGCCAGTGGAAGCTTGGTATCGACAAGAAGACCCAGATTTCGGGACCGAGAATTCACGCAG AGCATAAAACAGAGAACCTC
Downstream 100 bases:
>100_bases TACGGGTCCTCGCCCCGGGCCTCTAGACGCAAGCGTTCGAACCCATGCTTTCGCTCCTGCCCCTTTAGCTGTTGAGGCAG TACGGCAATGTCCTCGCTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 372; Mature: 372
Protein sequence:
>372_residues MIRAFKSSSNSTEIINLDRDAIRENHRNGRQTNIMFDTNILIAIESAYKTGQRHQELKNAGVLELARLIEKTSKYGVFIS PAAAYQELPPARRGDVEAAFDSFLADYLPNFREDPNSIKVPYAGGKMDPEHFSALSLERQKAISCSYASLLAMNVIHRLE ALNGLEKFALYIDYCAEVLDLISLKELTIARYVFAPENGLTDQLRTRKVAITNNFVKLKKGGGKGLTPVKVLERIALNGA NDLKLIAAADIVNNSREQFNFGIIEHDVWIATSDDKLYEFCCACPGYMGRERGGPLARYVETHTDIKGTRYWRDSIEIQQ RRLEERYFTVDREKEMDSIVQSAFDIEADLLNGKADDYFRLRSWRSARVMHD
Sequences:
>Translated_372_residues MIRAFKSSSNSTEIINLDRDAIRENHRNGRQTNIMFDTNILIAIESAYKTGQRHQELKNAGVLELARLIEKTSKYGVFIS PAAAYQELPPARRGDVEAAFDSFLADYLPNFREDPNSIKVPYAGGKMDPEHFSALSLERQKAISCSYASLLAMNVIHRLE ALNGLEKFALYIDYCAEVLDLISLKELTIARYVFAPENGLTDQLRTRKVAITNNFVKLKKGGGKGLTPVKVLERIALNGA NDLKLIAAADIVNNSREQFNFGIIEHDVWIATSDDKLYEFCCACPGYMGRERGGPLARYVETHTDIKGTRYWRDSIEIQQ RRLEERYFTVDREKEMDSIVQSAFDIEADLLNGKADDYFRLRSWRSARVMHD >Mature_372_residues MIRAFKSSSNSTEIINLDRDAIRENHRNGRQTNIMFDTNILIAIESAYKTGQRHQELKNAGVLELARLIEKTSKYGVFIS PAAAYQELPPARRGDVEAAFDSFLADYLPNFREDPNSIKVPYAGGKMDPEHFSALSLERQKAISCSYASLLAMNVIHRLE ALNGLEKFALYIDYCAEVLDLISLKELTIARYVFAPENGLTDQLRTRKVAITNNFVKLKKGGGKGLTPVKVLERIALNGA NDLKLIAAADIVNNSREQFNFGIIEHDVWIATSDDKLYEFCCACPGYMGRERGGPLARYVETHTDIKGTRYWRDSIEIQQ RRLEERYFTVDREKEMDSIVQSAFDIEADLLNGKADDYFRLRSWRSARVMHD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42279; Mature: 42279
Theoretical pI: Translated: 6.88; Mature: 6.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRAFKSSSNSTEIINLDRDAIRENHRNGRQTNIMFDTNILIAIESAYKTGQRHQELKNA CCCCCCCCCCCCEEEECCHHHHHHHCCCCCEEEEEEECEEEEEEECHHHCCHHHHHHHCC GVLELARLIEKTSKYGVFISPAAAYQELPPARRGDVEAAFDSFLADYLPNFREDPNSIKV CHHHHHHHHHHHHCCCEEECCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEE PYAGGKMDPEHFSALSLERQKAISCSYASLLAMNVIHRLEALNGLEKFALYIDYCAEVLD CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LISLKELTIARYVFAPENGLTDQLRTRKVAITNNFVKLKKGGGKGLTPVKVLERIALNGA HHHHHHHHHHHEEECCCCCCHHHHHHCEEEEECCEEEEECCCCCCCCHHHHHHHHHCCCC NDLKLIAAADIVNNSREQFNFGIIEHDVWIATSDDKLYEFCCACPGYMGRERGGPLARYV CCEEEEEEHHHHCCCHHHCCCCEEEEEEEEEECCHHHHHHHHCCCCCCCCCCCCCHHHHH ETHTDIKGTRYWRDSIEIQQRRLEERYFTVDREKEMDSIVQSAFDIEADLLNGKADDYFR HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHCCCCCCHHH LRSWRSARVMHD HHHCCCCCCCCC >Mature Secondary Structure MIRAFKSSSNSTEIINLDRDAIRENHRNGRQTNIMFDTNILIAIESAYKTGQRHQELKNA CCCCCCCCCCCCEEEECCHHHHHHHCCCCCEEEEEEECEEEEEEECHHHCCHHHHHHHCC GVLELARLIEKTSKYGVFISPAAAYQELPPARRGDVEAAFDSFLADYLPNFREDPNSIKV CHHHHHHHHHHHHCCCEEECCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEE PYAGGKMDPEHFSALSLERQKAISCSYASLLAMNVIHRLEALNGLEKFALYIDYCAEVLD CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LISLKELTIARYVFAPENGLTDQLRTRKVAITNNFVKLKKGGGKGLTPVKVLERIALNGA HHHHHHHHHHHEEECCCCCCHHHHHHCEEEEECCEEEEECCCCCCCCHHHHHHHHHCCCC NDLKLIAAADIVNNSREQFNFGIIEHDVWIATSDDKLYEFCCACPGYMGRERGGPLARYV CCEEEEEEHHHHCCCHHHCCCCEEEEEEEEEECCHHHHHHHHCCCCCCCCCCCCCHHHHH ETHTDIKGTRYWRDSIEIQQRRLEERYFTVDREKEMDSIVQSAFDIEADLLNGKADDYFR HHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHCCCCCCHHH LRSWRSARVMHD HHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA