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The map label for this gene is opuCB [H]

Identifier: 160902588

GI number: 160902588

Start: 1207198

End: 1207848

Strand: Direct

Name: opuCB [H]

Synonym: Pmob_1127

Alternate gene names: 160902588

Gene position: 1207198-1207848 (Clockwise)

Preceding gene: 160902587

Following gene: 160902589

Centisome position: 55.64

GC content: 39.02

Gene sequence:

>651_bases
ATGGAATTTTTTACATACGTTGCTGAAAATCTTGGTTATATGGGAATAAAGACTATGGAACATCTTTATTTGTTTGCATC
TTCTTGGGCAATTGCCATAGTTGTGGGAATGGCGATAGGAATCTATGTTACCCGCCCCGGGAAAGAGAAGAGTGGAAGAA
TAGCACTTTCAATCACAGGAATAGCCCAGGCGGTCCCAAGTATTGCCGTCATAGCTCTGGTTTTTTTATTCATGGGAATA
GGCCCAGCCCCGGCGATCTTTGCCCTGTTTTTATACAGCATAGTTCCTATAACTTTTAACACGGCATCTGGACTTTTCGG
CATTGATAAAGGTATGAAAGAAGCAGCAAGAGGAATGGGAATGACTAAAAGGGAAATCCTGTGGAAAGTAGAAATCCCAA
ACGCGATACCTACTATTTTTTCAGGAATAAGAAATGCAGCCATAATAAATTTAGGAACAGCTACAATCGCGTCAGCCATA
GGTGCTGGAGGATTGGGAGAATTAATTTTTATAGGTCTTGGGACCTTTAAATTCGAGATGATATTAGCTGGAGCTATTCC
AGTTTCAATAATGGCCGTTTTAATTGATTTCATACTCGCTTTAATACAAAACAAAATGACTTCGGAAGGTATTAAATTAC
AAAATGAATAA

Upstream 100 bases:

>100_bases
TGTGGTTACAGATAAGCAAAAGGTAATAGGAGTGATCAACTTAAAAGCTATATTTGAACAAATGTCAAATAAAGCAGAGG
TTTGATAAGAGGAGGATAAT

Downstream 100 bases:

>100_bases
TGAAAAAACTTTTAAATGGAGGTGTTAACATTGAAAAAATTGGCAGTACTTATGTTAGTTGTAGCGTTTTCTTTAACTGC
GCTATTTGGTGCAACTTTAA

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MEFFTYVAENLGYMGIKTMEHLYLFASSWAIAIVVGMAIGIYVTRPGKEKSGRIALSITGIAQAVPSIAVIALVFLFMGI
GPAPAIFALFLYSIVPITFNTASGLFGIDKGMKEAARGMGMTKREILWKVEIPNAIPTIFSGIRNAAIINLGTATIASAI
GAGGLGELIFIGLGTFKFEMILAGAIPVSIMAVLIDFILALIQNKMTSEGIKLQNE

Sequences:

>Translated_216_residues
MEFFTYVAENLGYMGIKTMEHLYLFASSWAIAIVVGMAIGIYVTRPGKEKSGRIALSITGIAQAVPSIAVIALVFLFMGI
GPAPAIFALFLYSIVPITFNTASGLFGIDKGMKEAARGMGMTKREILWKVEIPNAIPTIFSGIRNAAIINLGTATIASAI
GAGGLGELIFIGLGTFKFEMILAGAIPVSIMAVLIDFILALIQNKMTSEGIKLQNE
>Mature_216_residues
MEFFTYVAENLGYMGIKTMEHLYLFASSWAIAIVVGMAIGIYVTRPGKEKSGRIALSITGIAQAVPSIAVIALVFLFMGI
GPAPAIFALFLYSIVPITFNTASGLFGIDKGMKEAARGMGMTKREILWKVEIPNAIPTIFSGIRNAAIINLGTATIASAI
GAGGLGELIFIGLGTFKFEMILAGAIPVSIMAVLIDFILALIQNKMTSEGIKLQNE

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for glycine betaine, carnitine and choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788449, Length=191, Percent_Identity=37.17277486911, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1788451, Length=199, Percent_Identity=33.6683417085427, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1789033, Length=181, Percent_Identity=26.5193370165746, Blast_Score=88, Evalue=3e-19,
Organism=Escherichia coli, GI87081802, Length=143, Percent_Identity=30.0699300699301, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 22955; Mature: 22955

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFFTYVAENLGYMGIKTMEHLYLFASSWAIAIVVGMAIGIYVTRPGKEKSGRIALSITG
CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCEEEEEEHH
IAQAVPSIAVIALVFLFMGIGPAPAIFALFLYSIVPITFNTASGLFGIDKGMKEAARGMG
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHCCC
MTKREILWKVEIPNAIPTIFSGIRNAAIINLGTATIASAIGAGGLGELIFIGLGTFKFEM
CCHHHEEEEEECCCHHHHHHHHHHHHEEEECCHHHHHHHHCCCCHHHHHHHHCCHHHHHH
ILAGAIPVSIMAVLIDFILALIQNKMTSEGIKLQNE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCC
>Mature Secondary Structure
MEFFTYVAENLGYMGIKTMEHLYLFASSWAIAIVVGMAIGIYVTRPGKEKSGRIALSITG
CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCEEEEEEHH
IAQAVPSIAVIALVFLFMGIGPAPAIFALFLYSIVPITFNTASGLFGIDKGMKEAARGMG
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHCCC
MTKREILWKVEIPNAIPTIFSGIRNAAIINLGTATIASAIGAGGLGELIFIGLGTFKFEM
CCHHHEEEEEECCCHHHHHHHHHHHHEEEECCHHHHHHHHCCCCHHHHHHHHCCHHHHHH
ILAGAIPVSIMAVLIDFILALIQNKMTSEGIKLQNE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10216873; 9384377 [H]