Click here to switch to the map view.

The map label for this gene is glyS [H]

Identifier: 160902553

GI number: 160902553

Start: 1168233

End: 1170302

Strand: Direct

Name: glyS [H]

Synonym: Pmob_1092

Alternate gene names: 160902553

Gene position: 1168233-1170302 (Clockwise)

Preceding gene: 160902552

Following gene: 160902554

Centisome position: 53.85

GC content: 32.75

Gene sequence:

>2070_bases
ATGTTGAATAGGGCAATTTTTGAAATAGGTGTTGAAGATTTACCCCCATCAGAATTTGATAATATACTAACTCAATTGGA
AGAAGGATTAAAAAAATCCTTGGAAAAAAATGATTTGAATTTTTTGTCTATGAATATCTTCATTTCCCCTCGTAGGTTTG
GAGCTTACATCGTGGGCCTTCCAGATAAACAGCCCGATAAAAAAGAAAAAAGAAAAGGTCCTCCAAAAAAGATTTGCTTC
GATGAAAATAACCAACCTACAAAAGCACTCGAAGGTTTTGCAAAAGGCCAAGGTGTTCAGGTAAAAGATGTAAAATTTGA
AAATAATGACGGCGCAGAATACGCATATATAGAGTTTGTTAAAGCGGGAGAGCCTACCAAAATTATTTTACAAAATATCA
TTCCAGAATTGATAACAAACATGAATTTTGCCAAAAGTATGAGGTGGGGAAAAGGTAATTACACCTTTGTAAGACCGGTA
CATTGGGTCTTAGGTTTGTACAATAGAGAGATTTTAGAATTCGAAATGTTCAATGAAAAATCCTCCAACAAAAGTTATGG
TCATCGTTTTTTTGGCGAAGAGATGATAATTACAAATCCTCAAACTTTCTTTAGTGAATTAAAAAAGAACTATGTAATCC
CCCTATATGAAGAAAGAATAGAAGTAATAGAGAGAGAAATTCAAGAGCTAGAAGATGAATATAATATCAAGATTTCTTTG
GAAGAGCACGAGGATTTAATTCGAGAAATTGCCAAAATGACAGAATTTCCTAAAGGGGTAGTTGGAAGTTTTGATGAAAA
ATATCTTTTTCTACCACCAGAAATCATCATTGTCACTGTAAGACACCATCAAAGAAGTTTTGTGGCGATGAAAGATGGAA
AGGTAATCAACAAATACATAGCTTTCCAGGACGGATTTGGCAGAAAAAGCAACGTTACTAATGGCTATACTAGAGTAATA
AACGCAAGATTAGACGATGCAGCTTTTTACTATGAAGACGACTTAAAAACGGATATACAGAAGAGGCTTGAAGATTTAAA
GAGTATTACTTATCAAGTAGAATTAGGAAATTACAGAGAAAAATGTGAGCGAATATCAACACTCAGTTCAAAAATTGCCG
AAAAACTTGGTTTTGAAAATTTAGATGTAGTTAAAAGAGCCGGCTTGTTATGTAAAATTGACATCCCTTCAAAAGTTGTA
TATGAGTTTCCTGAATTGCAAGGAATTATGGCAAGAATCTATTTGAAACACAAAGGAGAAAATGAAGATGTTTTCTTAAC
AGCCGAAGAACACTACAAACCTCTTTCGGAAAATGATGAAATATCTCAAAATTTAGTTGCTAATATCGTCTCCATAGCGG
ACAAAATAGATGACCTAATCGGATATTTTGGTATAGGAAAGATCCCTTCAGGATCAAAAGATCCTTTTGCATTGAGAAGA
AAAGCTTTTGGAATCTTAAGAATTTTGATATCGATGGAATGGGACCTGAACCTTAAAGAACTTATCGACTTATCAGAAAA
AGTGTTCGCCGAAAGTGGGAAATCTAACATATCTATAAAACCTGTAGAAGTTGAGTTAAAAAGTTTCTTATCCAACCGTT
TAGGAACCATCTTAGAAAGAGAAAACATATCCGCAGAGGCAATAAATTCGGTTTTAATAAATGTATATAAACCTTTAAGA
GCTTACTTGGCTGCCAAATCATTGGATAAGTTTATAAAAAAAGAAGAATTTCAAGATTTTATTACAGCGTTTCAAAGGGT
AAACAACATTTCAAAAAACCATTATTCCCAAGAATATCATGGCAGACTATTCGTAGAAGAAGAGGAAAAAACGTTATTTC
AAAAATATTTGGAAGTGAAGTCTCAATTTGAAAACTGTTTGAAAAAATTAGATTACGATGGAGCGATTGAAAGCTTAATC
TCTTTAAAAGAAAATATTGACAGGTATTTTGATAACATTTTTGTTATGTCTGAAGATGAATCTATAAGAAGCAATAGACT
AGGTTTTTTAAAATCTTTATCAGCGCTGTTTTATGAAATTGGAGACGTGGAAAAACTATACAAAGGCTAA

Upstream 100 bases:

>100_bases
ATTGGAGTTAACGAAAGGCATCAATACATATTGGATATAAGGAATATGGCGAAAAGCTGTGCAAAACTATATATAGACAG
TTCAAATGCGGAGGTAATTG

Downstream 100 bases:

>100_bases
ATTTTAAGATAAGGCGTGTTTAAACAATGGATTTACTTTACTATGAAAATTTTAAAAGTTGCAGTTATTTCGTTCCTACC
TATAAAAGACAAGGTTCATA

Product: glycyl-tRNA synthetase subunit beta

Products: NA

Alternate protein names: Glycine--tRNA ligase beta subunit; GlyRS [H]

Number of amino acids: Translated: 689; Mature: 689

Protein sequence:

>689_residues
MLNRAIFEIGVEDLPPSEFDNILTQLEEGLKKSLEKNDLNFLSMNIFISPRRFGAYIVGLPDKQPDKKEKRKGPPKKICF
DENNQPTKALEGFAKGQGVQVKDVKFENNDGAEYAYIEFVKAGEPTKIILQNIIPELITNMNFAKSMRWGKGNYTFVRPV
HWVLGLYNREILEFEMFNEKSSNKSYGHRFFGEEMIITNPQTFFSELKKNYVIPLYEERIEVIEREIQELEDEYNIKISL
EEHEDLIREIAKMTEFPKGVVGSFDEKYLFLPPEIIIVTVRHHQRSFVAMKDGKVINKYIAFQDGFGRKSNVTNGYTRVI
NARLDDAAFYYEDDLKTDIQKRLEDLKSITYQVELGNYREKCERISTLSSKIAEKLGFENLDVVKRAGLLCKIDIPSKVV
YEFPELQGIMARIYLKHKGENEDVFLTAEEHYKPLSENDEISQNLVANIVSIADKIDDLIGYFGIGKIPSGSKDPFALRR
KAFGILRILISMEWDLNLKELIDLSEKVFAESGKSNISIKPVEVELKSFLSNRLGTILERENISAEAINSVLINVYKPLR
AYLAAKSLDKFIKKEEFQDFITAFQRVNNISKNHYSQEYHGRLFVEEEEKTLFQKYLEVKSQFENCLKKLDYDGAIESLI
SLKENIDRYFDNIFVMSEDESIRSNRLGFLKSLSALFYEIGDVEKLYKG

Sequences:

>Translated_689_residues
MLNRAIFEIGVEDLPPSEFDNILTQLEEGLKKSLEKNDLNFLSMNIFISPRRFGAYIVGLPDKQPDKKEKRKGPPKKICF
DENNQPTKALEGFAKGQGVQVKDVKFENNDGAEYAYIEFVKAGEPTKIILQNIIPELITNMNFAKSMRWGKGNYTFVRPV
HWVLGLYNREILEFEMFNEKSSNKSYGHRFFGEEMIITNPQTFFSELKKNYVIPLYEERIEVIEREIQELEDEYNIKISL
EEHEDLIREIAKMTEFPKGVVGSFDEKYLFLPPEIIIVTVRHHQRSFVAMKDGKVINKYIAFQDGFGRKSNVTNGYTRVI
NARLDDAAFYYEDDLKTDIQKRLEDLKSITYQVELGNYREKCERISTLSSKIAEKLGFENLDVVKRAGLLCKIDIPSKVV
YEFPELQGIMARIYLKHKGENEDVFLTAEEHYKPLSENDEISQNLVANIVSIADKIDDLIGYFGIGKIPSGSKDPFALRR
KAFGILRILISMEWDLNLKELIDLSEKVFAESGKSNISIKPVEVELKSFLSNRLGTILERENISAEAINSVLINVYKPLR
AYLAAKSLDKFIKKEEFQDFITAFQRVNNISKNHYSQEYHGRLFVEEEEKTLFQKYLEVKSQFENCLKKLDYDGAIESLI
SLKENIDRYFDNIFVMSEDESIRSNRLGFLKSLSALFYEIGDVEKLYKG
>Mature_689_residues
MLNRAIFEIGVEDLPPSEFDNILTQLEEGLKKSLEKNDLNFLSMNIFISPRRFGAYIVGLPDKQPDKKEKRKGPPKKICF
DENNQPTKALEGFAKGQGVQVKDVKFENNDGAEYAYIEFVKAGEPTKIILQNIIPELITNMNFAKSMRWGKGNYTFVRPV
HWVLGLYNREILEFEMFNEKSSNKSYGHRFFGEEMIITNPQTFFSELKKNYVIPLYEERIEVIEREIQELEDEYNIKISL
EEHEDLIREIAKMTEFPKGVVGSFDEKYLFLPPEIIIVTVRHHQRSFVAMKDGKVINKYIAFQDGFGRKSNVTNGYTRVI
NARLDDAAFYYEDDLKTDIQKRLEDLKSITYQVELGNYREKCERISTLSSKIAEKLGFENLDVVKRAGLLCKIDIPSKVV
YEFPELQGIMARIYLKHKGENEDVFLTAEEHYKPLSENDEISQNLVANIVSIADKIDDLIGYFGIGKIPSGSKDPFALRR
KAFGILRILISMEWDLNLKELIDLSEKVFAESGKSNISIKPVEVELKSFLSNRLGTILERENISAEAINSVLINVYKPLR
AYLAAKSLDKFIKKEEFQDFITAFQRVNNISKNHYSQEYHGRLFVEEEEKTLFQKYLEVKSQFENCLKKLDYDGAIESLI
SLKENIDRYFDNIFVMSEDESIRSNRLGFLKSLSALFYEIGDVEKLYKG

Specific function: Unknown

COG id: COG0751

COG function: function code J; Glycyl-tRNA synthetase, beta subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]

Homologues:

Organism=Escherichia coli, GI1789982, Length=692, Percent_Identity=31.0693641618497, Blast_Score=343, Evalue=2e-95,

Paralogues:

None

Copy number: 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 400 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 1,800 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008909
- InterPro:   IPR006194
- InterPro:   IPR015944
- InterPro:   IPR002311 [H]

Pfam domain/function: PF05746 DALR_1; PF02092 tRNA_synt_2f [H]

EC number: =6.1.1.14 [H]

Molecular weight: Translated: 79789; Mature: 79789

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: PS50861 AA_TRNA_LIGASE_II_GLYAB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNRAIFEIGVEDLPPSEFDNILTQLEEGLKKSLEKNDLNFLSMNIFISPRRFGAYIVGL
CCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHCEEEEEC
PDKQPDKKEKRKGPPKKICFDENNQPTKALEGFAKGQGVQVKDVKFENNDGAEYAYIEFV
CCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEEE
KAGEPTKIILQNIIPELITNMNFAKSMRWGKGNYTFVRPVHWVLGLYNREILEFEMFNEK
ECCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCEEEEHHHHHHHHHHCCHHHHHHHHCCC
SSNKSYGHRFFGEEMIITNPQTFFSELKKNYVIPLYEERIEVIEREIQELEDEYNIKISL
CCCCCCCHHHCCCCEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEE
EEHEDLIREIAKMTEFPKGVVGSFDEKYLFLPPEIIIVTVRHHQRSFVAMKDGKVINKYI
HHHHHHHHHHHHHHHCCCCHHCCCCCCEEECCCEEEEEEEECCCCCEEEECCCHHHHHHH
AFQDGFGRKSNVTNGYTRVINARLDDAAFYYEDDLKTDIQKRLEDLKSITYQVELGNYRE
HHCCCCCCCCCCCCHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHEEEEEECCHHH
KCERISTLSSKIAEKLGFENLDVVKRAGLLCKIDIPSKVVYEFPELQGIMARIYLKHKGE
HHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEEECCCHHHHHHCHHHHHHHHHHHHHCCCC
NEDVFLTAEEHYKPLSENDEISQNLVANIVSIADKIDDLIGYFGIGKIPSGSKDPFALRR
CCCEEEEEHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
KAFGILRILISMEWDLNLKELIDLSEKVFAESGKSNISIKPVEVELKSFLSNRLGTILER
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHH
ENISAEAINSVLINVYKPLRAYLAAKSLDKFIKKEEFQDFITAFQRVNNISKNHYSQEYH
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHC
GRLFVEEEEKTLFQKYLEVKSQFENCLKKLDYDGAIESLISLKENIDRYFDNIFVMSEDE
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCEEEECCCC
SIRSNRLGFLKSLSALFYEIGDVEKLYKG
HHHHHHHHHHHHHHHHHHHHCCHHHHHCC
>Mature Secondary Structure
MLNRAIFEIGVEDLPPSEFDNILTQLEEGLKKSLEKNDLNFLSMNIFISPRRFGAYIVGL
CCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHCEEEEEC
PDKQPDKKEKRKGPPKKICFDENNQPTKALEGFAKGQGVQVKDVKFENNDGAEYAYIEFV
CCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEEE
KAGEPTKIILQNIIPELITNMNFAKSMRWGKGNYTFVRPVHWVLGLYNREILEFEMFNEK
ECCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCEEEEHHHHHHHHHHCCHHHHHHHHCCC
SSNKSYGHRFFGEEMIITNPQTFFSELKKNYVIPLYEERIEVIEREIQELEDEYNIKISL
CCCCCCCHHHCCCCEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEE
EEHEDLIREIAKMTEFPKGVVGSFDEKYLFLPPEIIIVTVRHHQRSFVAMKDGKVINKYI
HHHHHHHHHHHHHHHCCCCHHCCCCCCEEECCCEEEEEEEECCCCCEEEECCCHHHHHHH
AFQDGFGRKSNVTNGYTRVINARLDDAAFYYEDDLKTDIQKRLEDLKSITYQVELGNYRE
HHCCCCCCCCCCCCHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHEEEEEECCHHH
KCERISTLSSKIAEKLGFENLDVVKRAGLLCKIDIPSKVVYEFPELQGIMARIYLKHKGE
HHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEEECCCHHHHHHCHHHHHHHHHHHHHCCCC
NEDVFLTAEEHYKPLSENDEISQNLVANIVSIADKIDDLIGYFGIGKIPSGSKDPFALRR
CCCEEEEEHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
KAFGILRILISMEWDLNLKELIDLSEKVFAESGKSNISIKPVEVELKSFLSNRLGTILER
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHH
ENISAEAINSVLINVYKPLRAYLAAKSLDKFIKKEEFQDFITAFQRVNNISKNHYSQEYH
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHC
GRLFVEEEEKTLFQKYLEVKSQFENCLKKLDYDGAIESLISLKENIDRYFDNIFVMSEDE
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCEEEECCCC
SIRSNRLGFLKSLSALFYEIGDVEKLYKG
HHHHHHHHHHHHHHHHHHHHCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]