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The map label for this gene is radA [H]

Identifier: 160901848

GI number: 160901848

Start: 391717

End: 392988

Strand: Direct

Name: radA [H]

Synonym: Pmob_0364

Alternate gene names: 160901848

Gene position: 391717-392988 (Clockwise)

Preceding gene: 160901847

Following gene: 160901849

Centisome position: 18.06

GC content: 33.96

Gene sequence:

>1272_bases
ATGTGTAATGAATTAGAATCCGCGGTAGAATATAATACCGCGGATGTTACTATTGATACTGGAAATATTAAAGTTCCAGA
CATAGTCTTTCTTGATCAAGAACTTCCTCCGGCGAAAAAAATACCTACTAATTTTCAAGAAATTGATAATGTGTTAAACG
GTGGGTTAGTGGAGGGTGCGGTCTATTTGTTGAGTGGCGATCCTGGTATTGGAAAAAGCACATTATTGGCTCAAATCGCA
AAGTCTATTCAGACAGCTGAAGGATACATATTCTATGTTTCTGGTGAAGAATCTACAGAACAAGTAGTTCAAAGATTCAA
TCGACTAGAAATAAAAAATAAAAATATAGGATTGATATTTGAAAACAATGTGGATGTTATACTTAATGCTTTAGAAAAGT
CTAATATGAAATCTTCTGTTATTTTCATAGATTCTGTTCAAACCTTAAAGATAGACAGTATTGATTCCTCACCTGGTAGT
ATTCTACAAGTAAGGGAAAGTACTAGAAAGATGGTAGAATACGCTAAAAAAAAGAATATCCCTGTAGTACTGGTAGGTCA
TGTAAACAAAGAAGGAGCTATTGCCGGTCCAAAAGTGTTGGAACACATGGTAGATTGTGTTCTTCAAATGGAATTGGAAG
GTGGATCTGGACTAAGGCTTTTAAAAGTAACCAAAAACCGATACGGTCCTACAGATGAAGTTGTTTTATTTGAAATAACC
CAAAAAGGCTTAAAACCAATAGATAATATAAATTCTTTTTTCTTATCTGATTATTCAAATGAATCGGGTAACACTTTAAC
TATAGTAAAAGTTGGTCAAAAATTGCTTCCAATAGAGATACAAGCTTTAGTCAGTAACCCGGTATACGGGTCCCCTAGAA
GGGTTACTTCTGGTATACCGTTAGATAGACTTTTAATGATAATTGCAGTACTTTCCAAGAAGTTGAAGCTCCCATTGGAA
AGTAAAGATATATTTGTCAGCAGTGCAGGAGGTCTAAGGATCAATGACAGTTCTATGGATGTTGCTATCGCTTTATCTTT
AATCTCCTCTATATTCGATACCCCACTTTCTTCTTCAACGATAGCCTTTGGAGAAATAGGTTTAGATGGGAGAATAAGAG
GTATTCCTCTTTTAGAAAAAAGATTGGAGCTTTCACAGAAAATTGGTTTTAATAATATAGTTATTCCAAAAAATCTTTCC
CCTAGAAAAAACTCTATTATAGTTGCAGAAAGTGTAAAAGATTTGATAAAATTATTCAAAAAAGGGGGATAA

Upstream 100 bases:

>100_bases
AAATGGAAAAGAAAGTGGTCAATAGTTGAGAAAATCTGAGAAACACTATGTCTGCAGTAATTGTGGCTATGAATCCGATA
AATGGTTCGCAAAATGTCCT

Downstream 100 bases:

>100_bases
AATTTTGAATGAGAAATTAGAAAGAATTTTTGAATTGTTGGCTCCGGGAAAGCCTATTAGAAAAGGTATAGACAGGATAA
TGGAAGCAAATTTGGGGGCT

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 423; Mature: 423

Protein sequence:

>423_residues
MCNELESAVEYNTADVTIDTGNIKVPDIVFLDQELPPAKKIPTNFQEIDNVLNGGLVEGAVYLLSGDPGIGKSTLLAQIA
KSIQTAEGYIFYVSGEESTEQVVQRFNRLEIKNKNIGLIFENNVDVILNALEKSNMKSSVIFIDSVQTLKIDSIDSSPGS
ILQVRESTRKMVEYAKKKNIPVVLVGHVNKEGAIAGPKVLEHMVDCVLQMELEGGSGLRLLKVTKNRYGPTDEVVLFEIT
QKGLKPIDNINSFFLSDYSNESGNTLTIVKVGQKLLPIEIQALVSNPVYGSPRRVTSGIPLDRLLMIIAVLSKKLKLPLE
SKDIFVSSAGGLRINDSSMDVAIALSLISSIFDTPLSSSTIAFGEIGLDGRIRGIPLLEKRLELSQKIGFNNIVIPKNLS
PRKNSIIVAESVKDLIKLFKKGG

Sequences:

>Translated_423_residues
MCNELESAVEYNTADVTIDTGNIKVPDIVFLDQELPPAKKIPTNFQEIDNVLNGGLVEGAVYLLSGDPGIGKSTLLAQIA
KSIQTAEGYIFYVSGEESTEQVVQRFNRLEIKNKNIGLIFENNVDVILNALEKSNMKSSVIFIDSVQTLKIDSIDSSPGS
ILQVRESTRKMVEYAKKKNIPVVLVGHVNKEGAIAGPKVLEHMVDCVLQMELEGGSGLRLLKVTKNRYGPTDEVVLFEIT
QKGLKPIDNINSFFLSDYSNESGNTLTIVKVGQKLLPIEIQALVSNPVYGSPRRVTSGIPLDRLLMIIAVLSKKLKLPLE
SKDIFVSSAGGLRINDSSMDVAIALSLISSIFDTPLSSSTIAFGEIGLDGRIRGIPLLEKRLELSQKIGFNNIVIPKNLS
PRKNSIIVAESVKDLIKLFKKGG
>Mature_423_residues
MCNELESAVEYNTADVTIDTGNIKVPDIVFLDQELPPAKKIPTNFQEIDNVLNGGLVEGAVYLLSGDPGIGKSTLLAQIA
KSIQTAEGYIFYVSGEESTEQVVQRFNRLEIKNKNIGLIFENNVDVILNALEKSNMKSSVIFIDSVQTLKIDSIDSSPGS
ILQVRESTRKMVEYAKKKNIPVVLVGHVNKEGAIAGPKVLEHMVDCVLQMELEGGSGLRLLKVTKNRYGPTDEVVLFEIT
QKGLKPIDNINSFFLSDYSNESGNTLTIVKVGQKLLPIEIQALVSNPVYGSPRRVTSGIPLDRLLMIIAVLSKKLKLPLE
SKDIFVSSAGGLRINDSSMDVAIALSLISSIFDTPLSSSTIAFGEIGLDGRIRGIPLLEKRLELSQKIGFNNIVIPKNLS
PRKNSIIVAESVKDLIKLFKKGG

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=385, Percent_Identity=37.6623376623377, Blast_Score=278, Evalue=4e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR004504
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC; PF05362 Lon_C [H]

EC number: NA

Molecular weight: Translated: 46136; Mature: 46136

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCNELESAVEYNTADVTIDTGNIKVPDIVFLDQELPPAKKIPTNFQEIDNVLNGGLVEGA
CCCHHHHHHCCCCCEEEEECCCEECCEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEEE
VYLLSGDPGIGKSTLLAQIAKSIQTAEGYIFYVSGEESTEQVVQRFNRLEIKNKNIGLIF
EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHEEECCCCEEEEE
ENNVDVILNALEKSNMKSSVIFIDSVQTLKIDSIDSSPGSILQVRESTRKMVEYAKKKNI
ECCHHHHHHHHHHCCCCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC
PVVLVGHVNKEGAIAGPKVLEHMVDCVLQMELEGGSGLRLLKVTKNRYGPTDEVVLFEIT
CEEEEEECCCCCCCCCHHHHHHHHHHHEEEEECCCCCEEEEEEECCCCCCCCCEEEEEEH
QKGLKPIDNINSFFLSDYSNESGNTLTIVKVGQKLLPIEIQALVSNPVYGSPRRVTSGIP
HHCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCC
LDRLLMIIAVLSKKLKLPLESKDIFVSSAGGLRINDSSMDVAIALSLISSIFDTPLSSST
HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCE
IAFGEIGLDGRIRGIPLLEKRLELSQKIGFNNIVIPKNLSPRKNSIIVAESVKDLIKLFK
EEEEEECCCCEECCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEHHHHHHHHHHHH
KGG
CCC
>Mature Secondary Structure
MCNELESAVEYNTADVTIDTGNIKVPDIVFLDQELPPAKKIPTNFQEIDNVLNGGLVEGA
CCCHHHHHHCCCCCEEEEECCCEECCEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEEE
VYLLSGDPGIGKSTLLAQIAKSIQTAEGYIFYVSGEESTEQVVQRFNRLEIKNKNIGLIF
EEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHEEECCCCEEEEE
ENNVDVILNALEKSNMKSSVIFIDSVQTLKIDSIDSSPGSILQVRESTRKMVEYAKKKNI
ECCHHHHHHHHHHCCCCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC
PVVLVGHVNKEGAIAGPKVLEHMVDCVLQMELEGGSGLRLLKVTKNRYGPTDEVVLFEIT
CEEEEEECCCCCCCCCHHHHHHHHHHHEEEEECCCCCEEEEEEECCCCCCCCCEEEEEEH
QKGLKPIDNINSFFLSDYSNESGNTLTIVKVGQKLLPIEIQALVSNPVYGSPRRVTSGIP
HHCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCC
LDRLLMIIAVLSKKLKLPLESKDIFVSSAGGLRINDSSMDVAIALSLISSIFDTPLSSST
HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCE
IAFGEIGLDGRIRGIPLLEKRLELSQKIGFNNIVIPKNLSPRKNSIIVAESVKDLIKLFK
EEEEEECCCCEECCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEHHHHHHHHHHHH
KGG
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]