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The map label for this gene is 160901571

Identifier: 160901571

GI number: 160901571

Start: 77763

End: 78371

Strand: Direct

Name: 160901571

Synonym: Pmob_0080

Alternate gene names: NA

Gene position: 77763-78371 (Clockwise)

Preceding gene: 160901570

Following gene: 160901572

Centisome position: 3.58

GC content: 33.66

Gene sequence:

>609_bases
ATGACACAGCTAAAAAATGTAAATAACCACAATACCGACAAATTAAGATCCTTCATCGCCATCGAAACTAATGAAAAATT
AGAAGGGTTGTTGACTGATTTAATCGAAAGGTTTCAAAGGATGGGATTTAAAGCAAATTGGACAAATGCGAAAAATGTCC
ATTTAACCTTGTTTTTCCTTGGGGATCAAAAGATGGAAAAGATAGCTCAATTAGCTTATAAAATTGGCGAAAGAGTATCC
GGATTTCCTACTTTTCATTTTAATATCCACAAGATGGGCTTCTTTGAAAATGATTCTCAGCCAAAGGTCTTATGGCTGGG
AATAGAAGAAGACAATACCTTAATCGGTTTGTACGAAGAAATAAAGAAGGTACTAAAGATTTCAGAATTAGAGGTTAAAG
ATACCAATTTTTTACCTCATATTACAGTCGGAAGAGTTAAATCGTTCCCTAACCACTGGAAAGAACTAATTAATTCTGTC
ACTTTTGATCAAATCCAAGTATACGTAAATTCTATCGGAATATACTCTTCTGAACTCACAAGAAAAGGTCCAATATATAA
AAAACTTTACACTATCGACTTTGAAGGAGGCGTCATCATTAATGGCTAA

Upstream 100 bases:

>100_bases
TACTTTGATCTATTTGACCGTTATAATCAGTCTATTATCGGGAGTTAATTATACTGTCAAAACCGCCAAACAATTCTAAA
AAAGAAAGGAGTCCTAGTAT

Downstream 100 bases:

>100_bases
AAATGATTCTAAAGACGCAAATAAAGAAGAATTGTTAGAAAAGCTTGTTAAAGAGTTAGAAAAAAATCATGGAACAGGAT
CAGTCATGTTAATGGGTAAG

Product: 2'-5' RNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MTQLKNVNNHNTDKLRSFIAIETNEKLEGLLTDLIERFQRMGFKANWTNAKNVHLTLFFLGDQKMEKIAQLAYKIGERVS
GFPTFHFNIHKMGFFENDSQPKVLWLGIEEDNTLIGLYEEIKKVLKISELEVKDTNFLPHITVGRVKSFPNHWKELINSV
TFDQIQVYVNSIGIYSSELTRKGPIYKKLYTIDFEGGVIING

Sequences:

>Translated_202_residues
MTQLKNVNNHNTDKLRSFIAIETNEKLEGLLTDLIERFQRMGFKANWTNAKNVHLTLFFLGDQKMEKIAQLAYKIGERVS
GFPTFHFNIHKMGFFENDSQPKVLWLGIEEDNTLIGLYEEIKKVLKISELEVKDTNFLPHITVGRVKSFPNHWKELINSV
TFDQIQVYVNSIGIYSSELTRKGPIYKKLYTIDFEGGVIING
>Mature_201_residues
TQLKNVNNHNTDKLRSFIAIETNEKLEGLLTDLIERFQRMGFKANWTNAKNVHLTLFFLGDQKMEKIAQLAYKIGERVSG
FPTFHFNIHKMGFFENDSQPKVLWLGIEEDNTLIGLYEEIKKVLKISELEVKDTNFLPHITVGRVKSFPNHWKELINSVT
FDQIQVYVNSIGIYSSELTRKGPIYKKLYTIDFEGGVIING

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0097 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004175
- InterPro:   IPR014051
- InterPro:   IPR009097 [H]

Pfam domain/function: PF02834 2_5_RNA_ligase [H]

EC number: NA

Molecular weight: Translated: 23386; Mature: 23255

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQLKNVNNHNTDKLRSFIAIETNEKLEGLLTDLIERFQRMGFKANWTNAKNVHLTLFFL
CCCCCCCCCCCHHHHHHEEEEECCCHHHHHHHHHHHHHHHCCCEECCCCCCEEEEEEEEE
GDQKMEKIAQLAYKIGERVSGFPTFHFNIHKMGFFENDSQPKVLWLGIEEDNTLIGLYEE
CCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCCEEEEEEECCCCCEEHHHHH
IKKVLKISELEVKDTNFLPHITVGRVKSFPNHWKELINSVTFDQIQVYVNSIGIYSSELT
HHHHHHHHCCEECCCCCCCCEEHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHC
RKGPIYKKLYTIDFEGGVIING
CCCCCEEEEEEEEECCCEEECC
>Mature Secondary Structure 
TQLKNVNNHNTDKLRSFIAIETNEKLEGLLTDLIERFQRMGFKANWTNAKNVHLTLFFL
CCCCCCCCCCHHHHHHEEEEECCCHHHHHHHHHHHHHHHCCCEECCCCCCEEEEEEEEE
GDQKMEKIAQLAYKIGERVSGFPTFHFNIHKMGFFENDSQPKVLWLGIEEDNTLIGLYEE
CCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCCEEEEEEECCCCCEEHHHHH
IKKVLKISELEVKDTNFLPHITVGRVKSFPNHWKELINSVTFDQIQVYVNSIGIYSSELT
HHHHHHHHCCEECCCCCCCCEEHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHC
RKGPIYKKLYTIDFEGGVIING
CCCCCEEEEEEEEECCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]