Click here to switch to the map view.

The map label for this gene is fecI [H]

Identifier: 160877468

GI number: 160877468

Start: 5161023

End: 5161529

Strand: Direct

Name: fecI [H]

Synonym: Sbal195_4366

Alternate gene names: 160877468

Gene position: 5161023-5161529 (Clockwise)

Preceding gene: 160877462

Following gene: 160877469

Centisome position: 96.52

GC content: 46.55

Gene sequence:

>507_bases
ATGATGTCGGTCAATATTTCTACTCCTATCAATAACCTATATAGAGATAACCAGTTTTGGCTACGCGGCTGGCTATACTC
ACGCGTGGGTTGTTCAGAAACAGCGGCCGACCTAGCCCAAGATACATTTCTACGTTTGTTAAAAACCGGAAATTTACCGC
CTTCAGGCGAATCGCGGCGTTTTTTAACCCGCATTGCCAAAGGATTGATGATTGACGCTTATCGTCGGCAGAAGATTGAA
GAAGCCTACCTAGAAAGTTTGAGCTTGATGCCAGAAACATTCATTCCTGGGCCAGAAATCCATCATGTCATCATTGAAAC
ACTCGCTGAAATTGCCGTTATGCTCGATAACTTGCCGGATAATGTGCGCTTGACGCTGTTACTGCGCCAGATAGAGGGTT
TAAGCTATGCCGACATTGCTAAGCAGCTATCAGTCTCTGTTTCATCGGTAGAAAAGTATGTTGCGCGAGGCTTAGCGGCC
TGCTGCCTCGCGCTGGAATCCTATTAG

Upstream 100 bases:

>100_bases
GCATAAGCAGGTAATCTCATGGGCGTAATGACACAAAACTTGACCTATCAAATGATAATCAATATCATTACAACATTAAT
AATATTCTTGCCTATACCGT

Downstream 100 bases:

>100_bases
TCATGCCAGCTAATCAATCTGGGGCCGAGAATATCGGGCAGGAAACCGATAGTGATGCCATTGAAGCGGCGGCTGGCTGG
ATGGCCCGTCTGTTGGCTGA

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MMSVNISTPINNLYRDNQFWLRGWLYSRVGCSETAADLAQDTFLRLLKTGNLPPSGESRRFLTRIAKGLMIDAYRRQKIE
EAYLESLSLMPETFIPGPEIHHVIIETLAEIAVMLDNLPDNVRLTLLLRQIEGLSYADIAKQLSVSVSSVEKYVARGLAA
CCLALESY

Sequences:

>Translated_168_residues
MMSVNISTPINNLYRDNQFWLRGWLYSRVGCSETAADLAQDTFLRLLKTGNLPPSGESRRFLTRIAKGLMIDAYRRQKIE
EAYLESLSLMPETFIPGPEIHHVIIETLAEIAVMLDNLPDNVRLTLLLRQIEGLSYADIAKQLSVSVSSVEKYVARGLAA
CCLALESY
>Mature_168_residues
MMSVNISTPINNLYRDNQFWLRGWLYSRVGCSETAADLAQDTFLRLLKTGNLPPSGESRRFLTRIAKGLMIDAYRRQKIE
EAYLESLSLMPETFIPGPEIHHVIIETLAEIAVMLDNLPDNVRLTLLLRQIEGLSYADIAKQLSVSVSSVEKYVARGLAA
CCLALESY

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates the fec genes for iron dicitrate transport (Probable) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790746, Length=161, Percent_Identity=42.2360248447205, Blast_Score=132, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 18909; Mature: 18909

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSVNISTPINNLYRDNQFWLRGWLYSRVGCSETAADLAQDTFLRLLKTGNLPPSGESRR
CCEECCCCCHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
FLTRIAKGLMIDAYRRQKIEEAYLESLSLMPETFIPGPEIHHVIIETLAEIAVMLDNLPD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
NVRLTLLLRQIEGLSYADIAKQLSVSVSSVEKYVARGLAACCLALESY
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMSVNISTPINNLYRDNQFWLRGWLYSRVGCSETAADLAQDTFLRLLKTGNLPPSGESRR
CCEECCCCCHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
FLTRIAKGLMIDAYRRQKIEEAYLESLSLMPETFIPGPEIHHVIIETLAEIAVMLDNLPD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
NVRLTLLLRQIEGLSYADIAKQLSVSVSSVEKYVARGLAACCLALESY
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2254251; 7610040; 9278503; 8052622 [H]