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The map label for this gene is ltrA [H]

Identifier: 160877462

GI number: 160877462

Start: 5153869

End: 5154825

Strand: Direct

Name: ltrA [H]

Synonym: Sbal195_4360

Alternate gene names: 160877462

Gene position: 5153869-5154825 (Clockwise)

Preceding gene: 160877456

Following gene: 160877468

Centisome position: 96.38

GC content: 48.8

Gene sequence:

>957_bases
ATGACCATCACTAAGTCCTTCAAGGAATTAATTGCCGTGATAAATAATCAATTTGTTGAGATACGCCATTTCGTCACAGT
TGCACAACTCGGCAGTTTTACCTTAGCGGCGCAGGCGTTAGGCATGACAGGTTCGGCGCTCAGTAAAAGCATAGTTCGAT
TAGAAACCCGCTTAGGCACTAAACTTTTACACCGCACCACAAGGCGTGTGAGCTTAACCAATGATGGCGATTCGTACCTC
AAAGACTGCCAAAATGCTATGGCAATCCTAGACAATGCACAGAGTCGACTCGGCAGCGAACAGCAAATTCCCTCAGGTCG
AGTGCGAGTGGATTTACCCGTCACGTTTGGGCGGCGATATATACTGCCAACCCTATTATCACTATCGCAAAAATATCCCA
AGCTCGAGTTATCCATCACCTTTAACGATAGGGCGACAGATCTATTCAATGATGGGATTGATTTGGCGGTGCGTGTCGGA
CAACTCGGCGACACTGTGGATTTAGTCGCCCGTAGATTAGGGGAACAACGCCGAGTGATCTGCGCATCTCCCGCCTATTT
CGCTCGACTTGGTACACCAAAAGACAAAGCAGATCTCAGCCAGCACCAATGCATTGTTGGCTGGCCGCTTGGGCAGCAAC
ATCGCTGGTTACTTAAAAATGAGGATGGGATCATCGAGGCCTATGACATTCCAGTGCGCCACGAAATCGCTGATTGCGAA
GCCATTTTAGCGGCCACTCTGGCGGGAGTGGGTTTAGCGCAAGTGCCGATATGGCTAGTTGAGGACTATCTTAAGACTGG
TGAGCTCATCTCAGTACTGGACGAACTTGCCAGTGACGACACACCTATCCACCTTATTTGGCTTAAAACCCCTTACCTCC
AACCCAAGCTACGGGTGATCATCGAAGAACTGGCCGAATTAGCCAAAACGCCAAAAAGCAGATTTAAGGCAGAATAA

Upstream 100 bases:

>100_bases
GTTAATCAATTACAAAATGACGTTCGCTTGTTAGTTAACGCTCATTTTCATACTGTGGTAGTAGCTTACGCGATTCACTT
TCCATGATTAAGTCACTAAA

Downstream 100 bases:

>100_bases
GTGAAAGGCCTCGACTGAGCGCGACCTTTCACTTTGGGACTAACGGTTATTTGCTTTGATGTATGGATTGGTCATAGAGA
GTGATCGCTTTGCTGAGCGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 317

Protein sequence:

>318_residues
MTITKSFKELIAVINNQFVEIRHFVTVAQLGSFTLAAQALGMTGSALSKSIVRLETRLGTKLLHRTTRRVSLTNDGDSYL
KDCQNAMAILDNAQSRLGSEQQIPSGRVRVDLPVTFGRRYILPTLLSLSQKYPKLELSITFNDRATDLFNDGIDLAVRVG
QLGDTVDLVARRLGEQRRVICASPAYFARLGTPKDKADLSQHQCIVGWPLGQQHRWLLKNEDGIIEAYDIPVRHEIADCE
AILAATLAGVGLAQVPIWLVEDYLKTGELISVLDELASDDTPIHLIWLKTPYLQPKLRVIIEELAELAKTPKSRFKAE

Sequences:

>Translated_318_residues
MTITKSFKELIAVINNQFVEIRHFVTVAQLGSFTLAAQALGMTGSALSKSIVRLETRLGTKLLHRTTRRVSLTNDGDSYL
KDCQNAMAILDNAQSRLGSEQQIPSGRVRVDLPVTFGRRYILPTLLSLSQKYPKLELSITFNDRATDLFNDGIDLAVRVG
QLGDTVDLVARRLGEQRRVICASPAYFARLGTPKDKADLSQHQCIVGWPLGQQHRWLLKNEDGIIEAYDIPVRHEIADCE
AILAATLAGVGLAQVPIWLVEDYLKTGELISVLDELASDDTPIHLIWLKTPYLQPKLRVIIEELAELAKTPKSRFKAE
>Mature_317_residues
TITKSFKELIAVINNQFVEIRHFVTVAQLGSFTLAAQALGMTGSALSKSIVRLETRLGTKLLHRTTRRVSLTNDGDSYLK
DCQNAMAILDNAQSRLGSEQQIPSGRVRVDLPVTFGRRYILPTLLSLSQKYPKLELSITFNDRATDLFNDGIDLAVRVGQ
LGDTVDLVARRLGEQRRVICASPAYFARLGTPKDKADLSQHQCIVGWPLGQQHRWLLKNEDGIIEAYDIPVRHEIADCEA
ILAATLAGVGLAQVPIWLVEDYLKTGELISVLDELASDDTPIHLIWLKTPYLQPKLRVIIEELAELAKTPKSRFKAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=292, Percent_Identity=29.1095890410959, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI145693193, Length=287, Percent_Identity=30.6620209059233, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI87081978, Length=307, Percent_Identity=31.9218241042345, Blast_Score=137, Evalue=8e-34,
Organism=Escherichia coli, GI1789639, Length=283, Percent_Identity=30.0353356890459, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1787128, Length=281, Percent_Identity=28.8256227758007, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1789440, Length=289, Percent_Identity=32.1799307958478, Blast_Score=127, Evalue=8e-31,
Organism=Escherichia coli, GI1787589, Length=279, Percent_Identity=32.258064516129, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1786713, Length=282, Percent_Identity=28.3687943262411, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1789173, Length=266, Percent_Identity=24.4360902255639, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1786448, Length=266, Percent_Identity=24.812030075188, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788706, Length=304, Percent_Identity=25, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87082132, Length=266, Percent_Identity=27.4436090225564, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1786508, Length=270, Percent_Identity=22.5925925925926, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI157672245, Length=120, Percent_Identity=30.8333333333333, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788748, Length=131, Percent_Identity=32.0610687022901, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35425; Mature: 35294

Theoretical pI: Translated: 7.98; Mature: 7.98

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTITKSFKELIAVINNQFVEIRHFVTVAQLGSFTLAAQALGMTGSALSKSIVRLETRLGT
CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
KLLHRTTRRVSLTNDGDSYLKDCQNAMAILDNAQSRLGSEQQIPSGRVRVDLPVTFGRRY
HHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHCCCHH
ILPTLLSLSQKYPKLELSITFNDRATDLFNDGIDLAVRVGQLGDTVDLVARRLGEQRRVI
HHHHHHHHHCCCCEEEEEEEECCCHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCCEE
CASPAYFARLGTPKDKADLSQHQCIVGWPLGQQHRWLLKNEDGIIEAYDIPVRHEIADCE
EECCHHHHHCCCCCCHHHHHHCCEEEECCCCCCCCEEEECCCCEEEEECCCHHHHHHHHH
AILAATLAGVGLAQVPIWLVEDYLKTGELISVLDELASDDTPIHLIWLKTPYLQPKLRVI
HHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHH
IEELAELAKTPKSRFKAE
HHHHHHHHHCCHHHCCCC
>Mature Secondary Structure 
TITKSFKELIAVINNQFVEIRHFVTVAQLGSFTLAAQALGMTGSALSKSIVRLETRLGT
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
KLLHRTTRRVSLTNDGDSYLKDCQNAMAILDNAQSRLGSEQQIPSGRVRVDLPVTFGRRY
HHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHCCCHH
ILPTLLSLSQKYPKLELSITFNDRATDLFNDGIDLAVRVGQLGDTVDLVARRLGEQRRVI
HHHHHHHHHCCCCEEEEEEEECCCHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCCEE
CASPAYFARLGTPKDKADLSQHQCIVGWPLGQQHRWLLKNEDGIIEAYDIPVRHEIADCE
EECCHHHHHCCCCCCHHHHHHCCEEEECCCCCCCCEEEECCCCEEEEECCCHHHHHHHHH
AILAATLAGVGLAQVPIWLVEDYLKTGELISVLDELASDDTPIHLIWLKTPYLQPKLRVI
HHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHH
IEELAELAKTPKSRFKAE
HHHHHHHHHCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]