| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is yjeH [H]
Identifier: 160877383
GI number: 160877383
Start: 5061333
End: 5062595
Strand: Reverse
Name: yjeH [H]
Synonym: Sbal195_4281
Alternate gene names: 160877383
Gene position: 5062595-5061333 (Counterclockwise)
Preceding gene: 160877385
Following gene: 160877382
Centisome position: 94.68
GC content: 50.04
Gene sequence:
>1263_bases ATGAATTCAAATAGCGGAACTATAGGTCGTTGGCAAGGTGCGGGTCTAATGGCGACCACTTTGCTCGGTACTGGTGTGTT TATTTTGCCTCAGATGACAATTGAAAAAGCGCAATCTGGCGCGCTAGTCGCATGGATATTGCTTACCTTAGCCATCATTC CTGTGGCGCTGGTTTTTGGCCGTTTAGCCAGTGTATTTCCCCATGCCGCTGGCCCCGCTTACTTTGTCGAAAAAGCCTTT GGTCGCACCGCTGGTCGAACAATTGGATTGATCTTTTTACTGGTTGTGCCCATGGGCGCCCCCGCTGCGATTTTGATGAC CTTTCAGTTTGTGAATGCCTTAATGCCGATATCGGGTTGGTCCAAGGTCGGTGTTGAAGTATTAGTGATTTTTGGCCTGT TCCTGATTAATTTAAGGGGCATTCAAGTGTCGGCCAAGCTGCAATTTGGCCTGACGCTGTGCATAGTGGCCGTCGTTGTT CTCTTATTTGGCGCAAGCAGTTTTCAGCCTGGTCACCTAACAACACTCGCCAGCCATGGTATGCCTGAAATGCCAACCGT GATGATTGCCGCAGGCATCGCCTTTTGGAGTTTCTTGGGCATAGAAGCGATGACGCATCTGGCCGATGATTTTCGCCGTC CACAGCAGGATATGATCCCCGCTATGATGATGGGTACTGTGCTGGTGGGGGTCATTTATGTGGCTTGTACACTATTACTA CTGTTAGTACCGACGGATAAAAGCGTCGCTATGATCGGCGTGTTTGATCAGTTGCTCGGTGGTTACGGCGCGCAAGTGAT TGGCGTGTTGGGGATCGCAAGTGGATTAGCTACCGTGAACGTGTATTCGGCCAGTGCGGCACGTTTAGTGTGGAGCTTTA GTTGTGAAGGCATTTTGCCGCGCTTCTTTGCGGTGAAGAATGCCCACGGCGTACCTATTCGCGCACTGGCTGCACTGTTA TCTGTGATGGCGAGCGTGATAGTGCTGACTTATCTTACTGGACAAGAGTTAGAACACCTTATTGCATGGAGCAACGGTGT ATTTGTGGTGATCTATTTGATGGCTATGTTAGCAGCCGCTAAGTTATTACCGCGCCATAATTGGCCGCTGGTGGCGCTGG GTTGTGCGTTTTGCTTGGCATTAGGTTTTGCCCTAGGTGCGAGCATGTCCTATGTGTTGGTGTTGATATTAGTGGTGGCG CCATTTCTGTGGTGGCAAAAGACCCATATCAGCCGCAAACAAGGTTTAGCGATTCCTGAGTAA
Upstream 100 bases:
>100_bases ATTTTGCCGGTATTGGACGTGGAGAACACTGAAATTAACGGCAGATTGTGGGGCAAAATCTCACTATACTGACAGCTCAA ATACCACAGAATATTAACAG
Downstream 100 bases:
>100_bases TATTCGGTTCCTCTGGGGCTAAATCAAAATGATGGGTTAATTAAGAAAGCCCCGAACTCTTTATGGTTATTAGAGTTCGG GGCTTTTTTGTGTGGCTGAG
Product: inner membrane protein YjeH
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 420; Mature: 420
Protein sequence:
>420_residues MNSNSGTIGRWQGAGLMATTLLGTGVFILPQMTIEKAQSGALVAWILLTLAIIPVALVFGRLASVFPHAAGPAYFVEKAF GRTAGRTIGLIFLLVVPMGAPAAILMTFQFVNALMPISGWSKVGVEVLVIFGLFLINLRGIQVSAKLQFGLTLCIVAVVV LLFGASSFQPGHLTTLASHGMPEMPTVMIAAGIAFWSFLGIEAMTHLADDFRRPQQDMIPAMMMGTVLVGVIYVACTLLL LLVPTDKSVAMIGVFDQLLGGYGAQVIGVLGIASGLATVNVYSASAARLVWSFSCEGILPRFFAVKNAHGVPIRALAALL SVMASVIVLTYLTGQELEHLIAWSNGVFVVIYLMAMLAAAKLLPRHNWPLVALGCAFCLALGFALGASMSYVLVLILVVA PFLWWQKTHISRKQGLAIPE
Sequences:
>Translated_420_residues MNSNSGTIGRWQGAGLMATTLLGTGVFILPQMTIEKAQSGALVAWILLTLAIIPVALVFGRLASVFPHAAGPAYFVEKAF GRTAGRTIGLIFLLVVPMGAPAAILMTFQFVNALMPISGWSKVGVEVLVIFGLFLINLRGIQVSAKLQFGLTLCIVAVVV LLFGASSFQPGHLTTLASHGMPEMPTVMIAAGIAFWSFLGIEAMTHLADDFRRPQQDMIPAMMMGTVLVGVIYVACTLLL LLVPTDKSVAMIGVFDQLLGGYGAQVIGVLGIASGLATVNVYSASAARLVWSFSCEGILPRFFAVKNAHGVPIRALAALL SVMASVIVLTYLTGQELEHLIAWSNGVFVVIYLMAMLAAAKLLPRHNWPLVALGCAFCLALGFALGASMSYVLVLILVVA PFLWWQKTHISRKQGLAIPE >Mature_420_residues MNSNSGTIGRWQGAGLMATTLLGTGVFILPQMTIEKAQSGALVAWILLTLAIIPVALVFGRLASVFPHAAGPAYFVEKAF GRTAGRTIGLIFLLVVPMGAPAAILMTFQFVNALMPISGWSKVGVEVLVIFGLFLINLRGIQVSAKLQFGLTLCIVAVVV LLFGASSFQPGHLTTLASHGMPEMPTVMIAAGIAFWSFLGIEAMTHLADDFRRPQQDMIPAMMMGTVLVGVIYVACTLLL LLVPTDKSVAMIGVFDQLLGGYGAQVIGVLGIASGLATVNVYSASAARLVWSFSCEGILPRFFAVKNAHGVPIRALAALL SVMASVIVLTYLTGQELEHLIAWSNGVFVVIYLMAMLAAAKLLPRHNWPLVALGCAFCLALGFALGASMSYVLVLILVVA PFLWWQKTHISRKQGLAIPE
Specific function: Unknown
COG id: COG0531
COG function: function code E; Amino acid transporters
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1790584, Length=368, Percent_Identity=33.1521739130435, Blast_Score=177, Evalue=1e-45,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004841 - InterPro: IPR002293 [H]
Pfam domain/function: PF00324 AA_permease [H]
EC number: NA
Molecular weight: Translated: 44626; Mature: 44626
Theoretical pI: Translated: 9.44; Mature: 9.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSNSGTIGRWQGAGLMATTLLGTGVFILPQMTIEKAQSGALVAWILLTLAIIPVALVFG CCCCCCCCEEECCCCHHHHHHHHCCHHEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH RLASVFPHAAGPAYFVEKAFGRTAGRTIGLIFLLVVPMGAPAAILMTFQFVNALMPISGW HHHHHCCCCCCHHHHHHHHHCHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC SKVGVEVLVIFGLFLINLRGIQVSAKLQFGLTLCIVAVVVLLFGASSFQPGHLTTLASHG HHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCC MPEMPTVMIAAGIAFWSFLGIEAMTHLADDFRRPQQDMIPAMMMGTVLVGVIYVACTLLL CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH LLVPTDKSVAMIGVFDQLLGGYGAQVIGVLGIASGLATVNVYSASAARLVWSFSCEGILP HHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEECCHHHHHHEECCCCCHHH RFFAVKNAHGVPIRALAALLSVMASVIVLTYLTGQELEHLIAWSNGVFVVIYLMAMLAAA HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH KLLPRHNWPLVALGCAFCLALGFALGASMSYVLVLILVVAPFLWWQKTHISRKQGLAIPE HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCC >Mature Secondary Structure MNSNSGTIGRWQGAGLMATTLLGTGVFILPQMTIEKAQSGALVAWILLTLAIIPVALVFG CCCCCCCCEEECCCCHHHHHHHHCCHHEECHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH RLASVFPHAAGPAYFVEKAFGRTAGRTIGLIFLLVVPMGAPAAILMTFQFVNALMPISGW HHHHHCCCCCCHHHHHHHHHCHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC SKVGVEVLVIFGLFLINLRGIQVSAKLQFGLTLCIVAVVVLLFGASSFQPGHLTTLASHG HHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCC MPEMPTVMIAAGIAFWSFLGIEAMTHLADDFRRPQQDMIPAMMMGTVLVGVIYVACTLLL CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH LLVPTDKSVAMIGVFDQLLGGYGAQVIGVLGIASGLATVNVYSASAARLVWSFSCEGILP HHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEECCHHHHHHEECCCCCHHH RFFAVKNAHGVPIRALAALLSVMASVIVLTYLTGQELEHLIAWSNGVFVVIYLMAMLAAA HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH KLLPRHNWPLVALGCAFCLALGFALGASMSYVLVLILVVAPFLWWQKTHISRKQGLAIPE HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503 [H]