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The map label for this gene is ydhC [H]

Identifier: 160877242

GI number: 160877242

Start: 4900177

End: 4900944

Strand: Direct

Name: ydhC [H]

Synonym: Sbal195_4139

Alternate gene names: 160877242

Gene position: 4900177-4900944 (Clockwise)

Preceding gene: 160877240

Following gene: 160877243

Centisome position: 91.64

GC content: 51.56

Gene sequence:

>768_bases
ATGTTGAAGCAAGACACGACGTTCGTTTCTGATGACACTCAAGTTCCCCACCTGCATAAGGTCAAATCGACCTCGGCAGA
TAAAACGTCGACCACACTCGCCGATCAAATTTTGGTGCAGATCCAAACCAGCATCATCAAGGGCGAACTGCCTGCGGGCA
GCAAGATTAACGAGCAAGCACTGGCCGAAAAATACGGCATCAGCCGCGGCCCGACCCGCGAAGCCCTGCAAACCTTAGAA
AGACAACGTTTAGTGGTGCGTGCGCCCCATGTTGGTGCCCGCGTCGCCCAGCTAACAGTGAGTGAACTTAACGATTTATA
TCAACTACGTAGCGTGCTTGAAGGCATGGCCTGCGAACTCGCCGCCAGCCGTATCACCCCAGAACAATTAGCCAAGCTAG
AAGATCTGCTCGCAACGCAAGAAGCGGCGCTCGCCAAGGGCGATACTTACTTCCAAGAAGAAGGCGATGTCGACTTCCAC
TACCAAATTATTCAAGCCAGCGGTAACAAGCATCTGCAGGAAACCTTAGTCGGCGGGCTGTATCACTTGCTGCGTATGTA
TCGCTACCAGTGCACTAATAAAAATCGTCCCGTGAAAGCGATTGCCGAGCACAGACGCATAGTCGAAGCCATTGCCCAGC
GCGATGGTGAGTTGGCCAGTTTGCTGATGCGCCGCCATATAGAACAAGGGCGTAAAAATACCGAATTACGCTTAATTGAA
TTGCAAGCCAATGCAGCCGCAAAAGAAACCTTAGCCAACATTAGCTAA

Upstream 100 bases:

>100_bases
AATGTAGACTTACGTCTAAGTAAACACATTGTTGACAATCCACTGCGAGAGGGCTATTTTTTACCCATTGTCGACAATCC
TATTAATAGTGATGCGCTCT

Downstream 100 bases:

>100_bases
GTTCATACGGCTCAATATGCCCACTTCCCATAAAATGGAAAAGGATAACACCATGACCCAAAGCGCAGGATTACGTTTTC
GCCAAGCTCTTGCTAAGGCC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MLKQDTTFVSDDTQVPHLHKVKSTSADKTSTTLADQILVQIQTSIIKGELPAGSKINEQALAEKYGISRGPTREALQTLE
RQRLVVRAPHVGARVAQLTVSELNDLYQLRSVLEGMACELAASRITPEQLAKLEDLLATQEAALAKGDTYFQEEGDVDFH
YQIIQASGNKHLQETLVGGLYHLLRMYRYQCTNKNRPVKAIAEHRRIVEAIAQRDGELASLLMRRHIEQGRKNTELRLIE
LQANAAAKETLANIS

Sequences:

>Translated_255_residues
MLKQDTTFVSDDTQVPHLHKVKSTSADKTSTTLADQILVQIQTSIIKGELPAGSKINEQALAEKYGISRGPTREALQTLE
RQRLVVRAPHVGARVAQLTVSELNDLYQLRSVLEGMACELAASRITPEQLAKLEDLLATQEAALAKGDTYFQEEGDVDFH
YQIIQASGNKHLQETLVGGLYHLLRMYRYQCTNKNRPVKAIAEHRRIVEAIAQRDGELASLLMRRHIEQGRKNTELRLIE
LQANAAAKETLANIS
>Mature_255_residues
MLKQDTTFVSDDTQVPHLHKVKSTSADKTSTTLADQILVQIQTSIIKGELPAGSKINEQALAEKYGISRGPTREALQTLE
RQRLVVRAPHVGARVAQLTVSELNDLYQLRSVLEGMACELAASRITPEQLAKLEDLLATQEAALAKGDTYFQEEGDVDFH
YQIIQASGNKHLQETLVGGLYHLLRMYRYQCTNKNRPVKAIAEHRRIVEAIAQRDGELASLLMRRHIEQGRKNTELRLIE
LQANAAAKETLANIS

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48994961, Length=200, Percent_Identity=32, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI87082149, Length=202, Percent_Identity=29.2079207920792, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787821, Length=197, Percent_Identity=24.8730964467005, Blast_Score=60, Evalue=1e-10,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 28462; Mature: 28462

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKQDTTFVSDDTQVPHLHKVKSTSADKTSTTLADQILVQIQTSIIKGELPAGSKINEQA
CCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
LAEKYGISRGPTREALQTLERQRLVVRAPHVGARVAQLTVSELNDLYQLRSVLEGMACEL
HHHHHCCCCCCHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AASRITPEQLAKLEDLLATQEAALAKGDTYFQEEGDVDFHYQIIQASGNKHLQETLVGGL
HHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHH
YHLLRMYRYQCTNKNRPVKAIAEHRRIVEAIAQRDGELASLLMRRHIEQGRKNTELRLIE
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEE
LQANAAAKETLANIS
EECCHHHHHHHHCCC
>Mature Secondary Structure
MLKQDTTFVSDDTQVPHLHKVKSTSADKTSTTLADQILVQIQTSIIKGELPAGSKINEQA
CCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
LAEKYGISRGPTREALQTLERQRLVVRAPHVGARVAQLTVSELNDLYQLRSVLEGMACEL
HHHHHCCCCCCHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AASRITPEQLAKLEDLLATQEAALAKGDTYFQEEGDVDFHYQIIQASGNKHLQETLVGGL
HHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHH
YHLLRMYRYQCTNKNRPVKAIAEHRRIVEAIAQRDGELASLLMRRHIEQGRKNTELRLIE
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEE
LQANAAAKETLANIS
EECCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]