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The map label for this gene is oprF [H]

Identifier: 160877206

GI number: 160877206

Start: 4857031

End: 4857639

Strand: Direct

Name: oprF [H]

Synonym: Sbal195_4102

Alternate gene names: 160877206

Gene position: 4857031-4857639 (Clockwise)

Preceding gene: 160877205

Following gene: 160877207

Centisome position: 90.83

GC content: 44.5

Gene sequence:

>609_bases
ATGAAAACTCTCACATTTTTTCTCAGTGTCACTCTTTTAGCTGGTTGTTCAATGCGCGATACAGTTAATATTGACGAAAT
GACCACAACCCAAGCCTATGATCTATCTGATAAAGATGGTGATGGCGTGATAGAGGCCCGTGAACGTTGCAATGATACCG
CGCAAGGGGCTGGCACAGACAACTATGGCTGCGGCAAAATCAAAGCGATAAACGAGCGAAAAGAAATAAATATTTTATTT
CCTAATGACTCTGCATATATCGCACCTGAGTATTATCCTCAGATAGAAGAAGTTGCCATTTTTCTTCGTCAGTATCCAAC
GACCAAAGTGACGATTGAAGGCCATACTAGTCGCACAGGCACCGATGAGCGTAATGCGGTATTATCGCAAGATCGTGCAA
ATGCAGTGACTGCTGTGTTAGCCGAACGCTTTAGTATTGATAGAAGTCGATTAACTGCAATTGGATATGGCTCTAGTCGC
CCTGTTGTTTTAGAGCAAACACCAGATGCAGAGATCCGTAACCGCCGTGTCGTGGCTGAAGTGACCGGTGATGATACGGC
CACGGACATGAAATGGACGATTTACTCGGTCGATGACAACACACAATAA

Upstream 100 bases:

>100_bases
ATCGCGTGCTAAATTCTACTGGACGCTTATTAGACTCACTCAGAGTCACCAGACCTGAAGCATGGCGTGGTGAGCGCAAC
TATGAAGGAGGAGCTAACTA

Downstream 100 bases:

>100_bases
AGGACTCACACATTAGGTTATGAACGGCAGACTTGGTTATAAACATTCATTATTGCGAGTCTGCCGCTTTAGCCTCATAG
CGTCAGCCTTAGGCATATGC

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MKTLTFFLSVTLLAGCSMRDTVNIDEMTTTQAYDLSDKDGDGVIEARERCNDTAQGAGTDNYGCGKIKAINERKEINILF
PNDSAYIAPEYYPQIEEVAIFLRQYPTTKVTIEGHTSRTGTDERNAVLSQDRANAVTAVLAERFSIDRSRLTAIGYGSSR
PVVLEQTPDAEIRNRRVVAEVTGDDTATDMKWTIYSVDDNTQ

Sequences:

>Translated_202_residues
MKTLTFFLSVTLLAGCSMRDTVNIDEMTTTQAYDLSDKDGDGVIEARERCNDTAQGAGTDNYGCGKIKAINERKEINILF
PNDSAYIAPEYYPQIEEVAIFLRQYPTTKVTIEGHTSRTGTDERNAVLSQDRANAVTAVLAERFSIDRSRLTAIGYGSSR
PVVLEQTPDAEIRNRRVVAEVTGDDTATDMKWTIYSVDDNTQ
>Mature_202_residues
MKTLTFFLSVTLLAGCSMRDTVNIDEMTTTQAYDLSDKDGDGVIEARERCNDTAQGAGTDNYGCGKIKAINERKEINILF
PNDSAYIAPEYYPQIEEVAIFLRQYPTTKVTIEGHTSRTGTDERNAVLSQDRANAVTAVLAERFSIDRSRLTAIGYGSSR
PVVLEQTPDAEIRNRRVVAEVTGDDTATDMKWTIYSVDDNTQ

Specific function: Has porin activity, forming small water-filled channels. Also has a structural role in determining cell shape and ability to grow in low-osmolarity medium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=101, Percent_Identity=34.6534653465347, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786962, Length=101, Percent_Identity=34.6534653465347, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 22421; Mature: 22421

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLTFFLSVTLLAGCSMRDTVNIDEMTTTQAYDLSDKDGDGVIEARERCNDTAQGAGTD
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCCCCCCC
NYGCGKIKAINERKEINILFPNDSAYIAPEYYPQIEEVAIFLRQYPTTKVTIEGHTSRTG
CCCCCEEEEECCCCEEEEEECCCCCEECCHHCCCHHHHHHHHHHCCCEEEEEECCCCCCC
TDERNAVLSQDRANAVTAVLAERFSIDRSRLTAIGYGSSRPVVLEQTPDAEIRNRRVVAE
CCCHHHHHCCCHHHHHHHHHHHHHCCCCHHEEEEECCCCCCEEEECCCCCHHHCCEEEEE
VTGDDTATDMKWTIYSVDDNTQ
ECCCCCCCCEEEEEEECCCCCC
>Mature Secondary Structure
MKTLTFFLSVTLLAGCSMRDTVNIDEMTTTQAYDLSDKDGDGVIEARERCNDTAQGAGTD
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCCCCCCC
NYGCGKIKAINERKEINILFPNDSAYIAPEYYPQIEEVAIFLRQYPTTKVTIEGHTSRTG
CCCCCEEEEECCCCEEEEEECCCCCEECCHHCCCHHHHHHHHHHCCCEEEEEECCCCCCC
TDERNAVLSQDRANAVTAVLAERFSIDRSRLTAIGYGSSRPVVLEQTPDAEIRNRRVVAE
CCCHHHHHCCCHHHHHHHHHHHHHCCCCHHEEEEECCCCCCEEEECCCCCHHHCCEEEEE
VTGDDTATDMKWTIYSVDDNTQ
ECCCCCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2447060; 10984043 [H]