Click here to switch to the map view.

The map label for this gene is ypfJ [H]

Identifier: 160877123

GI number: 160877123

Start: 4729674

End: 4730552

Strand: Reverse

Name: ypfJ [H]

Synonym: Sbal195_4019

Alternate gene names: 160877123

Gene position: 4730552-4729674 (Counterclockwise)

Preceding gene: 160877124

Following gene: 160877122

Centisome position: 88.47

GC content: 51.88

Gene sequence:

>879_bases
ATGCGTTGGCGTGACACTGACAGAAGCTCCAATATCGAAGACAGACGCGGCCAGCAAATGGCATCTGCGGGTGTGCCGAG
TGCTTTGTTACTCAGGTTCTTGCCCTTTTTGCTGAGAACCAAAATTGGCCGTGTGGTGTTGCTCATCGGCGGCATTTATT
TTGCGTTTCAGTATTTTACCGTTGGCCTGTCACTCGACCCGAACGCTCAAGCTAATCTTAGCCAATCCCAATCTAGCTCA
ACGACCGCGGTACAGGAGGAAAATGCCCAGTTTGTGGCGGCCATTTTAGGTACCACAGAAACCGTTTGGGGTCAGTTACT
CAAAGGTCAATATCGAGAGCCTAAGTTAGTGCTTTATCGCAATATGACCTCCACTGGCTGCGGTATGGGACAGGCGCAGT
CTGGGCCTTTCTATTGCCCCGCCGATAGCAAAGTATATATCGACCTTAGCTTTCTCGATGAACTTAAAACCTTAGGCGCG
CCCGGCGATTTTGCCTTTGCCTATGTGATTGCCCACGAGGTAGGCCACCATGTGCAAAACCTGCTGGGCACTAGCACTAA
GGTGCGCCAAGCCCAGCAATCTGGCAGCAAAGTGCAGGCTAATCAATTGAGTGTCGCGCTTGAATTACAGGCGGATTGCT
ACGCGGGTATTTGGGGGCATTATGTCAATCAACAACTTAACTTACTTGAAGCGGGCGATTTAGCGGAAGGCATTGCCGCC
GCCAGTGCAGTGGGTGATGATCGCTTGCAACAGATGGCGGGTCGCGCCGTACAGTCCGATGCTTTTACCCACGGCAGTTC
GGCGCAGCGGGTGAAATGGTTTAAGACAGGGTTTGATTCGGGTAATCTCGCCAGTTGTAATACCTTTGCGGCGAAGTGA

Upstream 100 bases:

>100_bases
CCACTAGGCGCTAGAGTGCAAATACGAAATAGATCTGTGCATCTAAGCGATTTTAATAGCGGGTTAACGAGTGTTTTTAA
CTACAGAGTGAAGGAATGCG

Downstream 100 bases:

>100_bases
TTTTGTTTGATATCTCAAATACGTACCGAACATAAATGCAAGGATAACTGAGTGGCCTTTAACGATACCTTTAGATTGAG
CAGCCACGCGGTTATTACTA

Product: zinc metallopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MRWRDTDRSSNIEDRRGQQMASAGVPSALLLRFLPFLLRTKIGRVVLLIGGIYFAFQYFTVGLSLDPNAQANLSQSQSSS
TTAVQEENAQFVAAILGTTETVWGQLLKGQYREPKLVLYRNMTSTGCGMGQAQSGPFYCPADSKVYIDLSFLDELKTLGA
PGDFAFAYVIAHEVGHHVQNLLGTSTKVRQAQQSGSKVQANQLSVALELQADCYAGIWGHYVNQQLNLLEAGDLAEGIAA
ASAVGDDRLQQMAGRAVQSDAFTHGSSAQRVKWFKTGFDSGNLASCNTFAAK

Sequences:

>Translated_292_residues
MRWRDTDRSSNIEDRRGQQMASAGVPSALLLRFLPFLLRTKIGRVVLLIGGIYFAFQYFTVGLSLDPNAQANLSQSQSSS
TTAVQEENAQFVAAILGTTETVWGQLLKGQYREPKLVLYRNMTSTGCGMGQAQSGPFYCPADSKVYIDLSFLDELKTLGA
PGDFAFAYVIAHEVGHHVQNLLGTSTKVRQAQQSGSKVQANQLSVALELQADCYAGIWGHYVNQQLNLLEAGDLAEGIAA
ASAVGDDRLQQMAGRAVQSDAFTHGSSAQRVKWFKTGFDSGNLASCNTFAAK
>Mature_292_residues
MRWRDTDRSSNIEDRRGQQMASAGVPSALLLRFLPFLLRTKIGRVVLLIGGIYFAFQYFTVGLSLDPNAQANLSQSQSSS
TTAVQEENAQFVAAILGTTETVWGQLLKGQYREPKLVLYRNMTSTGCGMGQAQSGPFYCPADSKVYIDLSFLDELKTLGA
PGDFAFAYVIAHEVGHHVQNLLGTSTKVRQAQQSGSKVQANQLSVALELQADCYAGIWGHYVNQQLNLLEAGDLAEGIAA
ASAVGDDRLQQMAGRAVQSDAFTHGSSAQRVKWFKTGFDSGNLASCNTFAAK

Specific function: Unknown

COG id: COG2321

COG function: function code R; Predicted metalloprotease

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788819, Length=294, Percent_Identity=50, Blast_Score=280, Evalue=7e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007343 [H]

Pfam domain/function: PF04228 Zn_peptidase [H]

EC number: NA

Molecular weight: Translated: 31630; Mature: 31630

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRWRDTDRSSNIEDRRGQQMASAGVPSALLLRFLPFLLRTKIGRVVLLIGGIYFAFQYFT
CCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGLSLDPNAQANLSQSQSSSTTAVQEENAQFVAAILGTTETVWGQLLKGQYREPKLVLYR
EEEEECCCCCCCCCCCCCCCCHHHHHCCHHEEHHHHCCHHHHHHHHHCCCCCCCCEEEEE
NMTSTGCGMGQAQSGPFYCPADSKVYIDLSFLDELKTLGAPGDFAFAYVIAHEVGHHVQN
CCCCCCCCCCCCCCCCEECCCCCEEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
LLGTSTKVRQAQQSGSKVQANQLSVALELQADCYAGIWGHYVNQQLNLLEAGDLAEGIAA
HHCCHHHHHHHHHCCCEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
ASAVGDDRLQQMAGRAVQSDAFTHGSSAQRVKWFKTGFDSGNLASCNTFAAK
HHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRWRDTDRSSNIEDRRGQQMASAGVPSALLLRFLPFLLRTKIGRVVLLIGGIYFAFQYFT
CCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGLSLDPNAQANLSQSQSSSTTAVQEENAQFVAAILGTTETVWGQLLKGQYREPKLVLYR
EEEEECCCCCCCCCCCCCCCCHHHHHCCHHEEHHHHCCHHHHHHHHHCCCCCCCCEEEEE
NMTSTGCGMGQAQSGPFYCPADSKVYIDLSFLDELKTLGAPGDFAFAYVIAHEVGHHVQN
CCCCCCCCCCCCCCCCEECCCCCEEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
LLGTSTKVRQAQQSGSKVQANQLSVALELQADCYAGIWGHYVNQQLNLLEAGDLAEGIAA
HHCCHHHHHHHHHCCCEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
ASAVGDDRLQQMAGRAVQSDAFTHGSSAQRVKWFKTGFDSGNLASCNTFAAK
HHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]