Click here to switch to the map view.

The map label for this gene is ydhP [H]

Identifier: 160877087

GI number: 160877087

Start: 4687152

End: 4688375

Strand: Reverse

Name: ydhP [H]

Synonym: Sbal195_3983

Alternate gene names: 160877087

Gene position: 4688375-4687152 (Counterclockwise)

Preceding gene: 160877088

Following gene: 160877082

Centisome position: 87.68

GC content: 52.7

Gene sequence:

>1224_bases
TTGGACATTGCTCAAAATCAGGCAGCTCAAAATAAGGCTAAGGGAGCCAGTACTCTGTGGGTGTTGCTCGCCTTAGCGCT
TGGCACATTTGCCTTAGGTACCACAGAATTTGCTTCCATGACTTTAGTGCCCTATATCGCCAGCGATTTAGGCGTAGATG
TCGCCCATGTAAGTTATGCCATTAGCGCCTATGCGCTGGGGGTTGTGGTCGGTTCGCCGATTATCATGGTGCTGGCGGTT
AGGGTCAGGCGGCGAACACTCTTGATTGCTCTAGCTGCCTTAATGGCGGTGGCCAATGGCTTAAGTGCGTTAGCGCCATC
ATTGAATTGGTTAATCTTTTTTCGTTTTCTCAGCGGCTTGCCCCACGGTGCCTATTTTGGTGTGGCTATGTTGCTCGCGG
CCTCTTTAGTGCCGCCAGAAATGAAGGCTCGCGCCGTATCGCGGGTGATTATTGGCCTTACACTGGCGACGATTATCGGT
GTGCCGTTTGCCACTTGGATGGGGCAAACTGTGGGCTGGCGCTCAGGGATTGGCATAGTGGCGATTTTGGCGACTATTAC
CGCTGTGATGGTGTATTTTTTAGCGCCTGATCAGGCCGTGGCCGCTGATGCGAGTCCAAGGAAAGAGTTACAAACCCTGA
AAAATCGTGAAGTCTGGCTGACGCTCGGTATCGCGGCCATAGGCTTTGGCGGTATCTTCTGCGTGTATACCTATCTGGCC
GAAACCTTAATCCAAGTGACGCAAGTCGAGCCGTTTAAGATCCCGATCATGATGGCGGTATTTGGTATTGGCGCAACATT
GGGCACGCTAGTGTGTGGCTGGGCGGCGGATAAGTCGGCCTTAGCGGCGGCGTTTTGGTCGTTAGTGTTAAGTACTGTGG
TATTAGCGATTTACCCGAGTTTGACCGGACATTATTGGGCGCTGATGCCCGTAGTATTCTTTGTCGGTTGTGGCTTGGGA
CTTGCCACCATAGTGCAAGCAAGATTGATGGATGTGGCGCCCGATGGGCAGGCCATGACAGGTGCGTTAGTGCAATGTGC
CTTTAATCTCGCCAATGCAATTGGCCCTTGGGTGGGTAGTTTAGTGATCCTTTCTGGACAAGGGATTGCCGCGACAGGTT
ATGCGGCCTCTTTGTTGTCTTTAGGAGGACTTGTGATGTGGTGGTTGACCCACAGGGAGAGTCGCCGCGCGGTGAGCTTA
AACACAGCCAATTGCGCTGACTAG

Upstream 100 bases:

>100_bases
ACTTAATTACTGAAAATCGGAGCCCCATAGTGGGCTCCAATTTATTTTTAGCACTTAACTTTGTAATTAATATCATTTTA
TAGAATAGCGGAGAAGACGT

Downstream 100 bases:

>100_bases
CAAGCGGATCACTCAGGTTCGAGGTGCCGCTATCCTGCGTCTCGAAGCTGTTTTGCTCAATCCGCTAACCTCAGTTTCGG
CTAGGGCTAGGCTCTTTGTA

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MDIAQNQAAQNKAKGASTLWVLLALALGTFALGTTEFASMTLVPYIASDLGVDVAHVSYAISAYALGVVVGSPIIMVLAV
RVRRRTLLIALAALMAVANGLSALAPSLNWLIFFRFLSGLPHGAYFGVAMLLAASLVPPEMKARAVSRVIIGLTLATIIG
VPFATWMGQTVGWRSGIGIVAILATITAVMVYFLAPDQAVAADASPRKELQTLKNREVWLTLGIAAIGFGGIFCVYTYLA
ETLIQVTQVEPFKIPIMMAVFGIGATLGTLVCGWAADKSALAAAFWSLVLSTVVLAIYPSLTGHYWALMPVVFFVGCGLG
LATIVQARLMDVAPDGQAMTGALVQCAFNLANAIGPWVGSLVILSGQGIAATGYAASLLSLGGLVMWWLTHRESRRAVSL
NTANCAD

Sequences:

>Translated_407_residues
MDIAQNQAAQNKAKGASTLWVLLALALGTFALGTTEFASMTLVPYIASDLGVDVAHVSYAISAYALGVVVGSPIIMVLAV
RVRRRTLLIALAALMAVANGLSALAPSLNWLIFFRFLSGLPHGAYFGVAMLLAASLVPPEMKARAVSRVIIGLTLATIIG
VPFATWMGQTVGWRSGIGIVAILATITAVMVYFLAPDQAVAADASPRKELQTLKNREVWLTLGIAAIGFGGIFCVYTYLA
ETLIQVTQVEPFKIPIMMAVFGIGATLGTLVCGWAADKSALAAAFWSLVLSTVVLAIYPSLTGHYWALMPVVFFVGCGLG
LATIVQARLMDVAPDGQAMTGALVQCAFNLANAIGPWVGSLVILSGQGIAATGYAASLLSLGGLVMWWLTHRESRRAVSL
NTANCAD
>Mature_407_residues
MDIAQNQAAQNKAKGASTLWVLLALALGTFALGTTEFASMTLVPYIASDLGVDVAHVSYAISAYALGVVVGSPIIMVLAV
RVRRRTLLIALAALMAVANGLSALAPSLNWLIFFRFLSGLPHGAYFGVAMLLAASLVPPEMKARAVSRVIIGLTLATIIG
VPFATWMGQTVGWRSGIGIVAILATITAVMVYFLAPDQAVAADASPRKELQTLKNREVWLTLGIAAIGFGGIFCVYTYLA
ETLIQVTQVEPFKIPIMMAVFGIGATLGTLVCGWAADKSALAAAFWSLVLSTVVLAIYPSLTGHYWALMPVVFFVGCGLG
LATIVQARLMDVAPDGQAMTGALVQCAFNLANAIGPWVGSLVILSGQGIAATGYAASLLSLGGLVMWWLTHRESRRAVSL
NTANCAD

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=330, Percent_Identity=36.0606060606061, Blast_Score=186, Evalue=2e-48,
Organism=Escherichia coli, GI1786595, Length=380, Percent_Identity=28.4210526315789, Blast_Score=159, Evalue=4e-40,
Organism=Escherichia coli, GI145693198, Length=333, Percent_Identity=23.1231231231231, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787808, Length=166, Percent_Identity=30.7228915662651, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 42663; Mature: 42663

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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EEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
>Mature Secondary Structure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EEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]