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The map label for this gene is psd [H]

Identifier: 160877006

GI number: 160877006

Start: 4597934

End: 4598812

Strand: Direct

Name: psd [H]

Synonym: Sbal195_3902

Alternate gene names: 160877006

Gene position: 4597934-4598812 (Clockwise)

Preceding gene: 160877005

Following gene: 160877007

Centisome position: 85.99

GC content: 48.81

Gene sequence:

>879_bases
TTGGATAAAGTCAAAATTGCGCTGCAGTACATGCTGCCGAAACACTTATTATCTCGTTTAGTGGGTAAACTCGCCGCAGC
CGAAGCGGGCGCGTTAACCACGGCCGCTATCAAGTGGTTTATCAAGCAATATAAAATTGATATGAGCGAAGCGGCGCAAA
GTGAGCCTGAAGCCTATAAAAGCTTTAATGCCTTTTTTACCCGCGCCCTTAAACCCGGTATTCGTCCGTTAGATATGGAC
GCCGATATCATGGTGCATCCCGTCGATGGCGCCGTAAGCCAATTAGGCCCGATTAAAAACGGCCGCATCTTCCAAGCTAA
GGGTCACCACTATTCATCGTTAACCTTGCTTGGCGATCAAGCTGAAGATGCTAAACGCTTCGAAGGCGGTGATTTTGCGA
CTATTTATCTGGCGCCTAAAGACTATCACCGTATCCACATGCCGATTAAAGGCACGTTATCAAAAATGACTTACGTACCT
GGTGAACTGTTTTCAGTGAATCCGTTAACGGCCAGAAACGTACCCGGTCTCTTTGCCCGTAACGAACGTGTGGTGGCGAT
TTTCGAAACCGAATTAGGTCCATTAGCCATGGTATTGGTTGGCGCAACGATTGTTGCCAGTATCGAAACGGTCTGGGCAG
GCACAGTCACGCCGCCGACAGGTAAGCAAGTCTTCACTTGGGAATATCCAACCCAAGGTCCCGATGCCATCACCTTAGAC
AAGGGCGAAGAAATGGGTCGCTTCAAGTTAGGCAGTACTGTAGTGATGTTGTTTGCTAAAGATGCTATCGCGACCTTTGC
TGAAGGTGTCGAAGCCGAAGCTGTAACGCGTATGGGACAAGCCTTCGCTAACCTGAAAGACGTTAAGCACGCGGATTAA

Upstream 100 bases:

>100_bases
GTCATGCCCGCCATTTCCGTGCGGCCACTGACGAATAACGACTTATTGATAAATAACAACAGTCTCAGCAAAGATTGAGC
AGTAAGAAAAGGAATTAAAA

Downstream 100 bases:

>100_bases
GCTTTCTTGAGTTCTGCTAAACCTTCGGGATTAATTGAATTACATTTAGCTGTGCTGCTATTTGGCGGCACAGCTTTGTT
TTCTAAATTAATCCCACTCA

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MDKVKIALQYMLPKHLLSRLVGKLAAAEAGALTTAAIKWFIKQYKIDMSEAAQSEPEAYKSFNAFFTRALKPGIRPLDMD
ADIMVHPVDGAVSQLGPIKNGRIFQAKGHHYSSLTLLGDQAEDAKRFEGGDFATIYLAPKDYHRIHMPIKGTLSKMTYVP
GELFSVNPLTARNVPGLFARNERVVAIFETELGPLAMVLVGATIVASIETVWAGTVTPPTGKQVFTWEYPTQGPDAITLD
KGEEMGRFKLGSTVVMLFAKDAIATFAEGVEAEAVTRMGQAFANLKDVKHAD

Sequences:

>Translated_292_residues
MDKVKIALQYMLPKHLLSRLVGKLAAAEAGALTTAAIKWFIKQYKIDMSEAAQSEPEAYKSFNAFFTRALKPGIRPLDMD
ADIMVHPVDGAVSQLGPIKNGRIFQAKGHHYSSLTLLGDQAEDAKRFEGGDFATIYLAPKDYHRIHMPIKGTLSKMTYVP
GELFSVNPLTARNVPGLFARNERVVAIFETELGPLAMVLVGATIVASIETVWAGTVTPPTGKQVFTWEYPTQGPDAITLD
KGEEMGRFKLGSTVVMLFAKDAIATFAEGVEAEAVTRMGQAFANLKDVKHAD
>Mature_292_residues
MDKVKIALQYMLPKHLLSRLVGKLAAAEAGALTTAAIKWFIKQYKIDMSEAAQSEPEAYKSFNAFFTRALKPGIRPLDMD
ADIMVHPVDGAVSQLGPIKNGRIFQAKGHHYSSLTLLGDQAEDAKRFEGGDFATIYLAPKDYHRIHMPIKGTLSKMTYVP
GELFSVNPLTARNVPGLFARNERVVAIFETELGPLAMVLVGATIVASIETVWAGTVTPPTGKQVFTWEYPTQGPDAITLD
KGEEMGRFKLGSTVVMLFAKDAIATFAEGVEAEAVTRMGQAFANLKDVKHAD

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI13489112, Length=306, Percent_Identity=32.3529411764706, Blast_Score=135, Evalue=5e-32,
Organism=Escherichia coli, GI1790604, Length=284, Percent_Identity=52.112676056338, Blast_Score=306, Evalue=7e-85,
Organism=Caenorhabditis elegans, GI71980843, Length=287, Percent_Identity=32.404181184669, Blast_Score=128, Evalue=4e-30,
Organism=Caenorhabditis elegans, GI71980840, Length=288, Percent_Identity=32.2916666666667, Blast_Score=127, Evalue=5e-30,
Organism=Saccharomyces cerevisiae, GI6321609, Length=262, Percent_Identity=27.0992366412214, Blast_Score=103, Evalue=3e-23,
Organism=Saccharomyces cerevisiae, GI6324160, Length=204, Percent_Identity=34.8039215686275, Blast_Score=95, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24649526, Length=311, Percent_Identity=32.475884244373, Blast_Score=129, Evalue=2e-30,
Organism=Drosophila melanogaster, GI24649528, Length=311, Percent_Identity=32.475884244373, Blast_Score=129, Evalue=2e-30,
Organism=Drosophila melanogaster, GI24649524, Length=311, Percent_Identity=32.475884244373, Blast_Score=129, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 31859; Mature: 31859

Theoretical pI: Translated: 7.93; Mature: 7.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKVKIALQYMLPKHLLSRLVGKLAAAEAGALTTAAIKWFIKQYKIDMSEAAQSEPEAYK
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHH
SFNAFFTRALKPGIRPLDMDADIMVHPVDGAVSQLGPIKNGRIFQAKGHHYSSLTLLGDQ
HHHHHHHHHHCCCCCEECCCCCEEEECCCCHHHHHCCCCCCEEEEECCCCEEEEEEECCC
AEDAKRFEGGDFATIYLAPKDYHRIHMPIKGTLSKMTYVPGELFSVNPLTARNVPGLFAR
CHHHHHCCCCCEEEEEECCCCCEEEECCHHHHHHHHEECCCCEEECCCCCCCCCCCCEEC
NERVVAIFETELGPLAMVLVGATIVASIETVWAGTVTPPTGKQVFTWEYPTQGPDAITLD
CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCEEEEEECCCCCCCEEEEC
KGEEMGRFKLGSTVVMLFAKDAIATFAEGVEAEAVTRMGQAFANLKDVKHAD
CCCCCCCEECCCEEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDKVKIALQYMLPKHLLSRLVGKLAAAEAGALTTAAIKWFIKQYKIDMSEAAQSEPEAYK
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHH
SFNAFFTRALKPGIRPLDMDADIMVHPVDGAVSQLGPIKNGRIFQAKGHHYSSLTLLGDQ
HHHHHHHHHHCCCCCEECCCCCEEEECCCCHHHHHCCCCCCEEEEECCCCEEEEEEECCC
AEDAKRFEGGDFATIYLAPKDYHRIHMPIKGTLSKMTYVPGELFSVNPLTARNVPGLFAR
CHHHHHCCCCCEEEEEECCCCCEEEECCHHHHHHHHEECCCCEEECCCCCCCCCCCCEEC
NERVVAIFETELGPLAMVLVGATIVASIETVWAGTVTPPTGKQVFTWEYPTQGPDAITLD
CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCEEEEEECCCCCCCEEEEC
KGEEMGRFKLGSTVVMLFAKDAIATFAEGVEAEAVTRMGQAFANLKDVKHAD
CCCCCCCEECCCEEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA