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The map label for this gene is orn

Identifier: 160877004

GI number: 160877004

Start: 4596149

End: 4596694

Strand: Reverse

Name: orn

Synonym: Sbal195_3900

Alternate gene names: 160877004

Gene position: 4596694-4596149 (Counterclockwise)

Preceding gene: 160877010

Following gene: 160877003

Centisome position: 85.96

GC content: 45.24

Gene sequence:

>546_bases
ATGACGGCAGATGTAAATAATCTCATTTGGATCGATTTGGAAATGACAGGGTTAGAGCCCGACGTCGACAGGATCATTGA
AATTGCCACTTTAGTGACAGATCAAGAACTCAATATTATCGGTCAAGGTCCGGTTATCGCGATTCATCAATCGGATGACG
TGCTGGCCGCTATGGATGATTGGAATCAAAAGCACCATGGTGAGTCAGGGTTGATTGACCGCGTTCGTGCTAGCCAAGAA
ACCGAAGCGCAAGCCGTGGCTAAGACGATTGCCTTCTTAGAACAGTATGTTCCTAAGGGCGCTTCTCCAATGTGTGGTAA
CAGTATTGGCCAAGATAGACGCTTCTTAAATCGTTATATGCGCGAGCTGGAAGATTATTTCCACTACCGCAATGTGGATG
TCAGTACGATTAAAGAGCTAGTGAAGCGTTGGAGCCCAGAAACTATGGCGGGCTTTAAGAAGCAAAACACTCACCAAGCA
CTGCAGGATATCCAAGAGTCGATCGCTGAATTGCAGTATTATCGCAGCAAAGTATTTAAAATTTGA

Upstream 100 bases:

>100_bases
GTCAATTAGGTGATTTTTTGTGTCGGAAAAAAGCAGTATGATACACGCTCTTGAATAAAAAAGCCTGAATTTAGGCTAAC
TGACATGATAAGGCTGATTT

Downstream 100 bases:

>100_bases
CCGATCAGTAGATAAATATGCAAGAAGGGGTTGCAGCCGCATGAATTTTTCATATAATGCGGCCTCAACTTTTTGATGCG
AACAGAGATGTACGGTCATT

Product: oligoribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MTADVNNLIWIDLEMTGLEPDVDRIIEIATLVTDQELNIIGQGPVIAIHQSDDVLAAMDDWNQKHHGESGLIDRVRASQE
TEAQAVAKTIAFLEQYVPKGASPMCGNSIGQDRRFLNRYMRELEDYFHYRNVDVSTIKELVKRWSPETMAGFKKQNTHQA
LQDIQESIAELQYYRSKVFKI

Sequences:

>Translated_181_residues
MTADVNNLIWIDLEMTGLEPDVDRIIEIATLVTDQELNIIGQGPVIAIHQSDDVLAAMDDWNQKHHGESGLIDRVRASQE
TEAQAVAKTIAFLEQYVPKGASPMCGNSIGQDRRFLNRYMRELEDYFHYRNVDVSTIKELVKRWSPETMAGFKKQNTHQA
LQDIQESIAELQYYRSKVFKI
>Mature_180_residues
TADVNNLIWIDLEMTGLEPDVDRIIEIATLVTDQELNIIGQGPVIAIHQSDDVLAAMDDWNQKHHGESGLIDRVRASQET
EAQAVAKTIAFLEQYVPKGASPMCGNSIGQDRRFLNRYMRELEDYFHYRNVDVSTIKELVKRWSPETMAGFKKQNTHQAL
QDIQESIAELQYYRSKVFKI

Specific function: 3'-to-5' exoribonuclease specific for small oligoribonucleotides

COG id: COG1949

COG function: function code A; Oligoribonuclease (3'->5' exoribonuclease)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain

Homologues:

Organism=Homo sapiens, GI224496106, Length=173, Percent_Identity=47.3988439306358, Blast_Score=181, Evalue=3e-46,
Organism=Escherichia coli, GI87082382, Length=181, Percent_Identity=64.0883977900553, Blast_Score=253, Evalue=5e-69,
Organism=Caenorhabditis elegans, GI17557752, Length=172, Percent_Identity=48.2558139534884, Blast_Score=164, Evalue=2e-41,
Organism=Saccharomyces cerevisiae, GI6323088, Length=182, Percent_Identity=40.6593406593407, Blast_Score=128, Evalue=4e-31,
Organism=Drosophila melanogaster, GI21355135, Length=175, Percent_Identity=46.2857142857143, Blast_Score=179, Evalue=1e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ORN_SHEB5 (A3D017)

Other databases:

- EMBL:   CP000563
- RefSeq:   YP_001048949.1
- ProteinModelPortal:   A3D017
- SMR:   A3D017
- STRING:   A3D017
- GeneID:   4843039
- GenomeReviews:   CP000563_GR
- KEGG:   sbl:Sbal_0551
- NMPDR:   fig|325240.3.peg.1625
- eggNOG:   COG1949
- HOGENOM:   HBG448545
- OMA:   WNKGTHG
- PhylomeDB:   A3D017
- ProtClustDB:   PRK05359
- GO:   GO:0005737
- HAMAP:   MF_00045
- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR022894
- InterPro:   IPR012337
- SMART:   SM00479

Pfam domain/function: PF00929 Exonuc_X-T; SSF53098 RNaseH_fold

EC number: 3.1.-.- [C]

Molecular weight: Translated: 20740; Mature: 20609

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: ACT_SITE 129-129

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTADVNNLIWIDLEMTGLEPDVDRIIEIATLVTDQELNIIGQGPVIAIHQSDDVLAAMDD
CCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCEEEEECCCCEEEHHHH
WNQKHHGESGLIDRVRASQETEAQAVAKTIAFLEQYVPKGASPMCGNSIGQDRRFLNRYM
HHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
RELEDYFHYRNVDVSTIKELVKRWSPETMAGFKKQNTHQALQDIQESIAELQYYRSKVFK
HHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC
I
C
>Mature Secondary Structure 
TADVNNLIWIDLEMTGLEPDVDRIIEIATLVTDQELNIIGQGPVIAIHQSDDVLAAMDD
CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCEEEEECCCCEEEHHHH
WNQKHHGESGLIDRVRASQETEAQAVAKTIAFLEQYVPKGASPMCGNSIGQDRRFLNRYM
HHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
RELEDYFHYRNVDVSTIKELVKRWSPETMAGFKKQNTHQALQDIQESIAELQYYRSKVFK
HHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC
I
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA