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The map label for this gene is tnpR [H]

Identifier: 160876056

GI number: 160876056

Start: 3494353

End: 3494919

Strand: Direct

Name: tnpR [H]

Synonym: Sbal195_2946

Alternate gene names: 160876056

Gene position: 3494353-3494919 (Clockwise)

Preceding gene: 160876052

Following gene: 160876058

Centisome position: 65.35

GC content: 38.62

Gene sequence:

>567_bases
ATGGCTAAGTATCACTACATCAGAGTATCGACAACACAGCAGCATACAGACCGTCAGGAGCTTAAAACGCCAGAAGGTTA
CACGCAGGTCATCGATAAAATTTCAGGGAGAACAACAAACCGTCCTTCGCTTAAAAACATGATTATCAATCTAGCTATTG
GTGATGAAGTGCTGGTGGACGATATCAGTCGCCTAGCTAGGTCTCTTAAAGACTTAAATGAGTTACTCCATCAAATAACA
AGTAAAGGCGTATCTGTCAGATTTATTAAAGAAAATCTTACTTTTGCAGGAGACAAATCTAATCCTACAAACGAACTTTT
ACTTAATCTGATTGGGGCAGTTTATCAATTTGAGGTGGATATCAAAAAAGAAAGACAACGTGAAGGTATTGCAGTCGCTA
AAGATAAAGGAGTTTATCACGGAAGAACAACTGCTATGCGTAAAAAGGCTGAGGCAATCAGTTTACTTAATGATGGTGTG
AGCCAGCGAAAGATTGCGGAACAACTTTCAATTAGCCTTTCATCAGTTCAGCGTATCGTGAAGCAGCATAAAGAAGATAT
TTTATAA

Upstream 100 bases:

>100_bases
GATATAAGAGAGCAACCAGCTCTCAAGTCTAGGGTTTAGACTTGTGAATACATCATCCGTAAGTTAAGATGCTCTTAGAT
AATCACTGGAGGTTCACACA

Downstream 100 bases:

>100_bases
TTTTAGACTAAGTTAATTTGCTGCTTGGTCTTTTGCTTAACACCACTCCATGTGCATAAGCATAAAAAAGCCCCAAGCTA
GACGCTTAAGGCTTCATTTT

Product: resolvase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MAKYHYIRVSTTQQHTDRQELKTPEGYTQVIDKISGRTTNRPSLKNMIINLAIGDEVLVDDISRLARSLKDLNELLHQIT
SKGVSVRFIKENLTFAGDKSNPTNELLLNLIGAVYQFEVDIKKERQREGIAVAKDKGVYHGRTTAMRKKAEAISLLNDGV
SQRKIAEQLSISLSSVQRIVKQHKEDIL

Sequences:

>Translated_188_residues
MAKYHYIRVSTTQQHTDRQELKTPEGYTQVIDKISGRTTNRPSLKNMIINLAIGDEVLVDDISRLARSLKDLNELLHQIT
SKGVSVRFIKENLTFAGDKSNPTNELLLNLIGAVYQFEVDIKKERQREGIAVAKDKGVYHGRTTAMRKKAEAISLLNDGV
SQRKIAEQLSISLSSVQRIVKQHKEDIL
>Mature_187_residues
AKYHYIRVSTTQQHTDRQELKTPEGYTQVIDKISGRTTNRPSLKNMIINLAIGDEVLVDDISRLARSLKDLNELLHQITS
KGVSVRFIKENLTFAGDKSNPTNELLLNLIGAVYQFEVDIKKERQREGIAVAKDKGVYHGRTTAMRKKAEAISLLNDGVS
QRKIAEQLSISLSSVQRIVKQHKEDIL

Specific function: Resolvase catalyzes the resolution (a site-specific recombination) of the cointegrated replicon to yield the final transposition products [H]

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the site-specific recombinase resolvase family [H]

Homologues:

Organism=Escherichia coli, GI1787404, Length=175, Percent_Identity=29.1428571428571, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1787827, Length=187, Percent_Identity=29.4117647058824, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1787638, Length=187, Percent_Identity=28.8770053475936, Blast_Score=75, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR006118
- InterPro:   IPR006119
- InterPro:   IPR006120 [H]

Pfam domain/function: PF02796 HTH_7; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 21255; Mature: 21124

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: PS00397 RECOMBINASES_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKYHYIRVSTTQQHTDRQELKTPEGYTQVIDKISGRTTNRPSLKNMIINLAIGDEVLVD
CCCEEEEEEECCHHHCCHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHH
DISRLARSLKDLNELLHQITSKGVSVRFIKENLTFAGDKSNPTNELLLNLIGAVYQFEVD
HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEECCCCCCCHHHHHHHHHHHHHHHHHH
IKKERQREGIAVAKDKGVYHGRTTAMRKKAEAISLLNDGVSQRKIAEQLSISLSSVQRIV
HHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
KQHKEDIL
HHHHHCCC
>Mature Secondary Structure 
AKYHYIRVSTTQQHTDRQELKTPEGYTQVIDKISGRTTNRPSLKNMIINLAIGDEVLVD
CCEEEEEEECCHHHCCHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHH
DISRLARSLKDLNELLHQITSKGVSVRFIKENLTFAGDKSNPTNELLLNLIGAVYQFEVD
HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEECCCCCCCHHHHHHHHHHHHHHHHHH
IKKERQREGIAVAKDKGVYHGRTTAMRKKAEAISLLNDGVSQRKIAEQLSISLSSVQRIV
HHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
KQHKEDIL
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2992807; 6312271; 3029727 [H]