Definition | Shewanella baltica OS195 chromosome, complete genome. |
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Accession | NC_009997 |
Length | 5,347,283 |
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The map label for this gene is trpD [H]
Identifier: 160875914
GI number: 160875914
Start: 3336608
End: 3337681
Strand: Direct
Name: trpD [H]
Synonym: Sbal195_2803
Alternate gene names: 160875914
Gene position: 3336608-3337681 (Clockwise)
Preceding gene: 160875913
Following gene: 160875915
Centisome position: 62.4
GC content: 49.81
Gene sequence:
>1074_bases ATGAGTACCAACCCTATTCAGCCTTTACTCGACGTTTTATACCAAGGTAAAAGTTTAAGCCGCGAGCAAACCGCCGAACT TTTTAGCGCGTTAATTCGCGGAGAAATGAGTGAAGCGGCAATGGCGGGAATGTTAGTTGCGCTGAAAATGCGCGGTGAGA CCATTGATGAGATCAGCGGCGCCGCCGATGCCATGCGCGCCGCTGCCAAACCTTTTCCTTGCCCTGAGCGAAACAACAAT CCGCTTCATAATGGCATAGTTGATATTGTTGGCACGGGTGGCGATGGCTTTAATACCATTAATATTTCCACCACAGCAGC CTTTGTTGCCGCGGCGGCAGGCGCTAAGGTCGCCAAACACGGCAATCGTAGCGTGTCGAGTAAATCGGGTTCATCGGATC TTTTGGCGCAATTTGGCATCGACTTAACTATGTCGCCAGAGACTGCCAGTCGTTGCCTCGACGCATTGAATCTGTGCTTT TTGTTTGCGCCCCACTACCATGGCGGGGTAAAACATGCGGTGCCCGTAAGACAAGCACTGAAAACGCGCACTTTATTCAA TGTGTTAGGGCCGCTAATTAACCCCGCACGACCTGAATTTATGTTACTTGGCGTGTATAGCCCTGAGTTAGTCTTACCGA TAGCGAAAGTATTAAAGGCGCTTGGCACAAAACGCGCTATGGTAGTGCACGGCAGCGGTTTAGATGAAGTCGCGCTGCAC GGCAACACCCAAGTTGCTGAGTTAAAAGACGGCGACATTATTGAGTATCAACTCACGCCCGCCGATTTAGGTGTGCCTTT AGCGCAAATATCAGACTTAGAAGGTGGCGAACCCGCGCAGAATGCCTTGATTACCGAGGCGATTTTAAAAGGCAACGGTA CTGAAGCACACGCCAATGCGGTCGCAATCAATGCCGGTTGTGCTTTATATGTCTGTGGAATTACTGATTCAGTCAAAGCC GGAACCTTACTTGCTCTCGCTACCATTCAAAGCGGCAAAGCATTTGAGTTATTAAGCCAGCTCGCAAAAGTCAGCGGTGA AGCCCATGTCAACGGTCAAGAAAGAGGAAGATAA
Upstream 100 bases:
>100_bases TTCAGTTCCACCCTGAATCAATTCTGACGACGTTGGGCAGCACATTGCTCATTCAAACCTTAGCCTTTCTTACCCAAGAC ATGACAACAGGAGTAACCGC
Downstream 100 bases:
>100_bases GCGAATGTCTCAAGTAGAAGTGACTCCAACAGCAATGACTCAAGACCTGCGTACTCAGCCAGAGGCAGCCACAAACGCTA TGCCAAAAAGTAATGTGTTA
Product: anthranilate phosphoribosyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 357; Mature: 356
Protein sequence:
>357_residues MSTNPIQPLLDVLYQGKSLSREQTAELFSALIRGEMSEAAMAGMLVALKMRGETIDEISGAADAMRAAAKPFPCPERNNN PLHNGIVDIVGTGGDGFNTINISTTAAFVAAAAGAKVAKHGNRSVSSKSGSSDLLAQFGIDLTMSPETASRCLDALNLCF LFAPHYHGGVKHAVPVRQALKTRTLFNVLGPLINPARPEFMLLGVYSPELVLPIAKVLKALGTKRAMVVHGSGLDEVALH GNTQVAELKDGDIIEYQLTPADLGVPLAQISDLEGGEPAQNALITEAILKGNGTEAHANAVAINAGCALYVCGITDSVKA GTLLALATIQSGKAFELLSQLAKVSGEAHVNGQERGR
Sequences:
>Translated_357_residues MSTNPIQPLLDVLYQGKSLSREQTAELFSALIRGEMSEAAMAGMLVALKMRGETIDEISGAADAMRAAAKPFPCPERNNN PLHNGIVDIVGTGGDGFNTINISTTAAFVAAAAGAKVAKHGNRSVSSKSGSSDLLAQFGIDLTMSPETASRCLDALNLCF LFAPHYHGGVKHAVPVRQALKTRTLFNVLGPLINPARPEFMLLGVYSPELVLPIAKVLKALGTKRAMVVHGSGLDEVALH GNTQVAELKDGDIIEYQLTPADLGVPLAQISDLEGGEPAQNALITEAILKGNGTEAHANAVAINAGCALYVCGITDSVKA GTLLALATIQSGKAFELLSQLAKVSGEAHVNGQERGR >Mature_356_residues STNPIQPLLDVLYQGKSLSREQTAELFSALIRGEMSEAAMAGMLVALKMRGETIDEISGAADAMRAAAKPFPCPERNNNP LHNGIVDIVGTGGDGFNTINISTTAAFVAAAAGAKVAKHGNRSVSSKSGSSDLLAQFGIDLTMSPETASRCLDALNLCFL FAPHYHGGVKHAVPVRQALKTRTLFNVLGPLINPARPEFMLLGVYSPELVLPIAKVLKALGTKRAMVVHGSGLDEVALHG NTQVAELKDGDIIEYQLTPADLGVPLAQISDLEGGEPAQNALITEAILKGNGTEAHANAVAINAGCALYVCGITDSVKAG TLLALATIQSGKAFELLSQLAKVSGEAHVNGQERGR
Specific function: Tryptophan biosynthesis; first step. Tryptophan biosynthesis; second step. [C]
COG id: COG0547
COG function: function code E; Anthranilate phosphoribosyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the anthranilate phosphoribosyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI1787517, Length=339, Percent_Identity=53.9823008849557, Blast_Score=319, Evalue=2e-88, Organism=Saccharomyces cerevisiae, GI6320561, Length=289, Percent_Identity=33.5640138408304, Blast_Score=125, Evalue=7e-30,
Paralogues:
None
Copy number: 945 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 900 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005940 - InterPro: IPR000312 - InterPro: IPR017459 - InterPro: IPR020072 [H]
Pfam domain/function: PF02885 Glycos_trans_3N; PF00591 Glycos_transf_3 [H]
EC number: =2.4.2.18 [H]
Molecular weight: Translated: 37238; Mature: 37107
Theoretical pI: Translated: 6.42; Mature: 6.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTNPIQPLLDVLYQGKSLSREQTAELFSALIRGEMSEAAMAGMLVALKMRGETIDEISG CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHCC AADAMRAAAKPFPCPERNNNPLHNGIVDIVGTGGDGFNTINISTTAAFVAAAAGAKVAKH HHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEHHHHHHHHHHHCCHHHHC GNRSVSSKSGSSDLLAQFGIDLTMSPETASRCLDALNLCFLFAPHYHGGVKHAVPVRQAL CCCCCCCCCCCHHHHHHHCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH KTRTLFNVLGPLINPARPEFMLLGVYSPELVLPIAKVLKALGTKRAMVVHGSGLDEVALH HHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEC GNTQVAELKDGDIIEYQLTPADLGVPLAQISDLEGGEPAQNALITEAILKGNGTEAHANA CCCEEEECCCCCEEEEEECHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCE VAINAGCALYVCGITDSVKAGTLLALATIQSGKAFELLSQLAKVSGEAHVNGQERGR EEEECCCEEEEECCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCEECCCHHCCC >Mature Secondary Structure STNPIQPLLDVLYQGKSLSREQTAELFSALIRGEMSEAAMAGMLVALKMRGETIDEISG CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHCC AADAMRAAAKPFPCPERNNNPLHNGIVDIVGTGGDGFNTINISTTAAFVAAAAGAKVAKH HHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEHHHHHHHHHHHCCHHHHC GNRSVSSKSGSSDLLAQFGIDLTMSPETASRCLDALNLCFLFAPHYHGGVKHAVPVRQAL CCCCCCCCCCCHHHHHHHCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH KTRTLFNVLGPLINPARPEFMLLGVYSPELVLPIAKVLKALGTKRAMVVHGSGLDEVALH HHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEC GNTQVAELKDGDIIEYQLTPADLGVPLAQISDLEGGEPAQNALITEAILKGNGTEAHANA CCCEEEECCCCCEEEEEECHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCE VAINAGCALYVCGITDSVKAGTLLALATIQSGKAFELLSQLAKVSGEAHVNGQERGR EEEECCCEEEEECCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCEECCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA