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The map label for this gene is ycfH [H]

Identifier: 160875681

GI number: 160875681

Start: 3043952

End: 3044803

Strand: Reverse

Name: ycfH [H]

Synonym: Sbal195_2569

Alternate gene names: 160875681

Gene position: 3044803-3043952 (Counterclockwise)

Preceding gene: 160875682

Following gene: 160875679

Centisome position: 56.94

GC content: 48.83

Gene sequence:

>852_bases
TTGACCTCGATCCCTTGGCTGGGTATCCTTGTCGTCCTTTTGTTATTCAGCTTGGAAATCCCTGTGCTTATTGATTCACA
CTGCCATCTCGATCGCCTTAAAGCGGCGCCTGATCAACAAACCCTAGAACATATTCTGGCCAGCGCGAAAGCCCGTGGCG
TGGACTATATGCTATGCGTCAACGTGCGCCAGCAGGGATTTGAATCGATGCGAGATAAAGTTGCAGCCTTCGATCAGGTA
TTTTTATCATCGGGCGTGCATCCATTAGACGTTAAAGAAGGGCTTGATGTTGAGCAAATCCGTCGCTTTGCCACCGATCC
TAAAGTGGTCGCGATTGGTGAAACTGGCCTAGATTATTTTTATGCCGACGAAACTAAATTGCTGCAACAACAATGTTTTG
AGCAGCAGATCGCCCTTGCGGTCGAAGTGAATAAACCTTTGATTGTCCATACCCGTGATGCACGTGAAGACACGATCACT
ATGCTTAAGCAGGGCAACGCGGATAAAGTCGGCGGCGTACTGCATTGCTTTACCGAGAACTGGGAAATGGCGAAAGCGGC
GATTGACCTTGGCTTTTACATTTCAGTATCAGGCATAGTCACCTTTAAAAATGCCGGTGAACTTCGCACTGTTATCCGTA
AAGTGCCACAGGATCGCCTGCTGGTTGAAACGGATTCGCCTTATTTGGCGCCTATTCCACACCGTGGTCAAGAGAACCAG
CCCGCCTATGTGCGTGATGTGGCTGAGTTTGTGGCCGAGCTTAGAGGTGAGCGCTACGAGGATCTTGCTGAGTACACCAG
TAATAACTTCTTTAATTTATTCAAAGATGCGGCGCGTTTAGTCGGCCGTTAG

Upstream 100 bases:

>100_bases
AATTAGGTTTAAACGCTCTGATTTAAGCGTTACTCGCGTTTAACTGTTCTAGTTTTAACATTGGCCCACACTCTAAACTG
ATACTTCGCCTCCGTGGAAT

Downstream 100 bases:

>100_bases
CTTTAAGTGCTTTGACCCATGTTATGCGATTGCGCGATTGCCAATACTGAGACATAAAGGCTCAGGCAAAAAGACTCAGG
CATAAAGACACTGGCATAAA

Product: TatD family hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MTSIPWLGILVVLLLFSLEIPVLIDSHCHLDRLKAAPDQQTLEHILASAKARGVDYMLCVNVRQQGFESMRDKVAAFDQV
FLSSGVHPLDVKEGLDVEQIRRFATDPKVVAIGETGLDYFYADETKLLQQQCFEQQIALAVEVNKPLIVHTRDAREDTIT
MLKQGNADKVGGVLHCFTENWEMAKAAIDLGFYISVSGIVTFKNAGELRTVIRKVPQDRLLVETDSPYLAPIPHRGQENQ
PAYVRDVAEFVAELRGERYEDLAEYTSNNFFNLFKDAARLVGR

Sequences:

>Translated_283_residues
MTSIPWLGILVVLLLFSLEIPVLIDSHCHLDRLKAAPDQQTLEHILASAKARGVDYMLCVNVRQQGFESMRDKVAAFDQV
FLSSGVHPLDVKEGLDVEQIRRFATDPKVVAIGETGLDYFYADETKLLQQQCFEQQIALAVEVNKPLIVHTRDAREDTIT
MLKQGNADKVGGVLHCFTENWEMAKAAIDLGFYISVSGIVTFKNAGELRTVIRKVPQDRLLVETDSPYLAPIPHRGQENQ
PAYVRDVAEFVAELRGERYEDLAEYTSNNFFNLFKDAARLVGR
>Mature_282_residues
TSIPWLGILVVLLLFSLEIPVLIDSHCHLDRLKAAPDQQTLEHILASAKARGVDYMLCVNVRQQGFESMRDKVAAFDQVF
LSSGVHPLDVKEGLDVEQIRRFATDPKVVAIGETGLDYFYADETKLLQQQCFEQQIALAVEVNKPLIVHTRDAREDTITM
LKQGNADKVGGVLHCFTENWEMAKAAIDLGFYISVSGIVTFKNAGELRTVIRKVPQDRLLVETDSPYLAPIPHRGQENQP
AYVRDVAEFVAELRGERYEDLAEYTSNNFFNLFKDAARLVGR

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=280, Percent_Identity=28.9285714285714, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI110349734, Length=280, Percent_Identity=28.9285714285714, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI226061853, Length=287, Percent_Identity=28.5714285714286, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI225903424, Length=221, Percent_Identity=29.4117647058824, Blast_Score=95, Evalue=7e-20,
Organism=Homo sapiens, GI226061614, Length=267, Percent_Identity=29.2134831460674, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI14042943, Length=272, Percent_Identity=26.8382352941176, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI225903439, Length=236, Percent_Identity=27.9661016949153, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI226061595, Length=235, Percent_Identity=29.3617021276596, Blast_Score=77, Evalue=2e-14,
Organism=Escherichia coli, GI1787342, Length=259, Percent_Identity=55.5984555984556, Blast_Score=286, Evalue=2e-78,
Organism=Escherichia coli, GI48994985, Length=237, Percent_Identity=33.3333333333333, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI87082439, Length=260, Percent_Identity=31.1538461538462, Blast_Score=117, Evalue=7e-28,
Organism=Caenorhabditis elegans, GI17559024, Length=266, Percent_Identity=27.0676691729323, Blast_Score=114, Evalue=8e-26,
Organism=Caenorhabditis elegans, GI71980746, Length=271, Percent_Identity=30.6273062730627, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17543026, Length=304, Percent_Identity=26.6447368421053, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17565396, Length=269, Percent_Identity=26.0223048327138, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24586117, Length=240, Percent_Identity=31.6666666666667, Blast_Score=91, Evalue=7e-19,
Organism=Drosophila melanogaster, GI221330018, Length=240, Percent_Identity=31.6666666666667, Blast_Score=91, Evalue=7e-19,
Organism=Drosophila melanogaster, GI24648690, Length=289, Percent_Identity=28.3737024221453, Blast_Score=86, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 31852; Mature: 31721

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: PS01137 TATD_1 ; PS01090 TATD_2 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSIPWLGILVVLLLFSLEIPVLIDSHCHLDRLKAAPDQQTLEHILASAKARGVDYMLCV
CCCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEE
NVRQQGFESMRDKVAAFDQVFLSSGVHPLDVKEGLDVEQIRRFATDPKVVAIGETGLDYF
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHHCCCCCEEEECCCCCCEE
YADETKLLQQQCFEQQIALAVEVNKPLIVHTRDAREDTITMLKQGNADKVGGVLHCFTEN
ECCHHHHHHHHHHHHHHEEEEECCCCEEEEECCCCHHHHHHHHCCCCCHHCCEEEEECCC
WEMAKAAIDLGFYISVSGIVTFKNAGELRTVIRKVPQDRLLVETDSPYLAPIPHRGQENQ
HHHHHHHHHHCEEEEEEEEEEECCCHHHHHHHHHCCCCCEEEECCCCEECCCCCCCCCCC
PAYVRDVAEFVAELRGERYEDLAEYTSNNFFNLFKDAARLVGR
CHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
TSIPWLGILVVLLLFSLEIPVLIDSHCHLDRLKAAPDQQTLEHILASAKARGVDYMLCV
CCCCHHHHHHHHHHHHCCCCEEECCCCCHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEE
NVRQQGFESMRDKVAAFDQVFLSSGVHPLDVKEGLDVEQIRRFATDPKVVAIGETGLDYF
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHHCCCCCEEEECCCCCCEE
YADETKLLQQQCFEQQIALAVEVNKPLIVHTRDAREDTITMLKQGNADKVGGVLHCFTEN
ECCHHHHHHHHHHHHHHEEEEECCCCEEEEECCCCHHHHHHHHCCCCCHHCCEEEEECCC
WEMAKAAIDLGFYISVSGIVTFKNAGELRTVIRKVPQDRLLVETDSPYLAPIPHRGQENQ
HHHHHHHHHHCEEEEEEEEEEECCCHHHHHHHHHCCCCCEEEECCCCEECCCCCCCCCCC
PAYVRDVAEFVAELRGERYEDLAEYTSNNFFNLFKDAARLVGR
CHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]