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The map label for this gene is exbD2 [H]

Identifier: 160874782

GI number: 160874782

Start: 2012611

End: 2013015

Strand: Direct

Name: exbD2 [H]

Synonym: Sbal195_1665

Alternate gene names: 160874782

Gene position: 2012611-2013015 (Clockwise)

Preceding gene: 160874781

Following gene: 160874783

Centisome position: 37.64

GC content: 43.21

Gene sequence:

>405_bases
ATGGCACGTAAAAAGCATTCCAGTATAGATGAGGAAGCGCAAATTGATATGACACCGATGCTCGACATCGTGTTCATCAT
GCTAATCTTCTTCATTGTAACAACGTCATTCGTGAAACCATCTGGTTTGGACTACAACAAACCAAAAGCTTCACAAGCGA
CTTCAAAGCCTTCGGCTAACATCTTTATCGGCGTCAGTAAAACAGGCGTGATCATGATGGAAAACCGTCAGGTTGATATC
GAACGTGTAACAGCAAACGTTGAGCGTATGCTGGCTGAAGCTCCTGAAGCAGCTGTATTGATTCAGGCTGATAAAGACGC
AATGCACGGCTTAGTTGTTAAAGTTCTAGACCAAGTGAAAGCAGCTGGTATAGATAAAATTTCGGTATCTGCGGGGAACG
ATTAA

Upstream 100 bases:

>100_bases
TTATCGGGAGTATTCTTCAGTACTCGCCTCGATGCCAAAATGAAAATCAGTTTAGAAAAGCTAAAAGACAGCATGCCGCA
CCACTAGAGAGAGATTGAAC

Downstream 100 bases:

>100_bases
TATGCTAAGAGCACTAGTATCGATCATTATTGGTGCTGCTGTGACTTTTGGTCTGTTCGCTTTTATGGCGTTCTTGGTCG
GTGGCGGCGCACAGCGCGGC

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 133

Protein sequence:

>134_residues
MARKKHSSIDEEAQIDMTPMLDIVFIMLIFFIVTTSFVKPSGLDYNKPKASQATSKPSANIFIGVSKTGVIMMENRQVDI
ERVTANVERMLAEAPEAAVLIQADKDAMHGLVVKVLDQVKAAGIDKISVSAGND

Sequences:

>Translated_134_residues
MARKKHSSIDEEAQIDMTPMLDIVFIMLIFFIVTTSFVKPSGLDYNKPKASQATSKPSANIFIGVSKTGVIMMENRQVDI
ERVTANVERMLAEAPEAAVLIQADKDAMHGLVVKVLDQVKAAGIDKISVSAGND
>Mature_133_residues
ARKKHSSIDEEAQIDMTPMLDIVFIMLIFFIVTTSFVKPSGLDYNKPKASQATSKPSANIFIGVSKTGVIMMENRQVDIE
RVTANVERMLAEAPEAAVLIQADKDAMHGLVVKVLDQVKAAGIDKISVSAGND

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 14564; Mature: 14433

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.0 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARKKHSSIDEEAQIDMTPMLDIVFIMLIFFIVTTSFVKPSGLDYNKPKASQATSKPSAN
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCE
IFIGVSKTGVIMMENRQVDIERVTANVERMLAEAPEAAVLIQADKDAMHGLVVKVLDQVK
EEEEECCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHH
AAGIDKISVSAGND
HCCCCEEEECCCCC
>Mature Secondary Structure 
ARKKHSSIDEEAQIDMTPMLDIVFIMLIFFIVTTSFVKPSGLDYNKPKASQATSKPSAN
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCE
IFIGVSKTGVIMMENRQVDIERVTANVERMLAEAPEAAVLIQADKDAMHGLVVKVLDQVK
EEEEECCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHH
AAGIDKISVSAGND
HCCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9781885; 10952301 [H]