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The map label for this gene is rnhB [H]

Identifier: 160874612

GI number: 160874612

Start: 1797842

End: 1798474

Strand: Direct

Name: rnhB [H]

Synonym: Sbal195_1495

Alternate gene names: 160874612

Gene position: 1797842-1798474 (Clockwise)

Preceding gene: 160874611

Following gene: 160874613

Centisome position: 33.62

GC content: 49.76

Gene sequence:

>633_bases
GTGGCAACCTATAAAAGTTTAACCGAAGCCGATTTACTGGCCTTTTCAACCGGTTTGATTGCCGGTGTGGATGAAGTCGG
CCGCGGCCCCTTAGTCGGCGATGTGGTCACTGCCGCTGTGATTTTAGATCCAAACAAGCCCATCAGTGGTCTGAATGATT
CTAAAAAACTCAGTGAGAAACGCCGCGAAGCCCTGTTCGATGAGATTTGTGATAAAGCTTTGTGTTATCACGTTGGCCGC
GCCAGTCCTGCTGAAATTGATGAGCTGAATATTCTGCACGCCACTATGTTGGCAATGCAGCGCGCGGTTGCTGGGCTTAA
TATTGCCCCTGAGCTTGTACTTGTGGATGGCAATCGTAGCCCCATCTTTGTTGCCCATAATGGCGCAGGGCTTACCAGCC
ACAGCATCATTAAAGGTGATGGTTTGATTGCCAGCATCAGCGCCGCTTCGATCATCGCGAAAGTGACGCGGGATCGCGAG
ATGGACGTGCTCGATGCCGCTTATCCGCAATACGGTTTTGCAAAACATAAGGGCTATCCAACTAAGGCGCATTTTGAGGC
CATAGCCGAACATGGTGTGTTTGACCAATATCGTAAAAGTTTCAAACCCGTCAAGGCATTACTGGAACTGTAA

Upstream 100 bases:

>100_bases
ACCAAGTATTACGCCGTGATGCGAGTTTAAAAGCCGCCGAGGCCGTGATGGCACTGGTTGATCTCAAACAAAATCATGCT
AAATCGCAGGAGGCTAACTA

Downstream 100 bases:

>100_bases
GCGCTGTTTTTAGCACTATAGTTCCCGTTATCCGGCAAAGTCACTGGCTCTGGCTGCGTGACTTTGTTAGTCTGCTTTCT
AGTTATTGTTAACCTGCTAT

Product: ribonuclease HII

Products: NA

Alternate protein names: RNase HII [H]

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MATYKSLTEADLLAFSTGLIAGVDEVGRGPLVGDVVTAAVILDPNKPISGLNDSKKLSEKRREALFDEICDKALCYHVGR
ASPAEIDELNILHATMLAMQRAVAGLNIAPELVLVDGNRSPIFVAHNGAGLTSHSIIKGDGLIASISAASIIAKVTRDRE
MDVLDAAYPQYGFAKHKGYPTKAHFEAIAEHGVFDQYRKSFKPVKALLEL

Sequences:

>Translated_210_residues
MATYKSLTEADLLAFSTGLIAGVDEVGRGPLVGDVVTAAVILDPNKPISGLNDSKKLSEKRREALFDEICDKALCYHVGR
ASPAEIDELNILHATMLAMQRAVAGLNIAPELVLVDGNRSPIFVAHNGAGLTSHSIIKGDGLIASISAASIIAKVTRDRE
MDVLDAAYPQYGFAKHKGYPTKAHFEAIAEHGVFDQYRKSFKPVKALLEL
>Mature_209_residues
ATYKSLTEADLLAFSTGLIAGVDEVGRGPLVGDVVTAAVILDPNKPISGLNDSKKLSEKRREALFDEICDKALCYHVGRA
SPAEIDELNILHATMLAMQRAVAGLNIAPELVLVDGNRSPIFVAHNGAGLTSHSIIKGDGLIASISAASIIAKVTRDREM
DVLDAAYPQYGFAKHKGYPTKAHFEAIAEHGVFDQYRKSFKPVKALLEL

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family [H]

Homologues:

Organism=Escherichia coli, GI1786380, Length=194, Percent_Identity=66.4948453608247, Blast_Score=258, Evalue=2e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 22540; Mature: 22409

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATYKSLTEADLLAFSTGLIAGVDEVGRGPLVGDVVTAAVILDPNKPISGLNDSKKLSEK
CCCCHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHHHHEEEEECCCCCCCCCCCHHHHHHH
RREALFDEICDKALCYHVGRASPAEIDELNILHATMLAMQRAVAGLNIAPELVLVDGNRS
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
PIFVAHNGAGLTSHSIIKGDGLIASISAASIIAKVTRDREMDVLDAAYPQYGFAKHKGYP
EEEEEECCCCCCCCCEEECCCCEEHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCC
TKAHFEAIAEHGVFDQYRKSFKPVKALLEL
CHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ATYKSLTEADLLAFSTGLIAGVDEVGRGPLVGDVVTAAVILDPNKPISGLNDSKKLSEK
CCCHHHHHHHHHHHHHHHHHCHHHHCCCCCHHHHHHEEEEECCCCCCCCCCCHHHHHHH
RREALFDEICDKALCYHVGRASPAEIDELNILHATMLAMQRAVAGLNIAPELVLVDGNRS
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
PIFVAHNGAGLTSHSIIKGDGLIASISAASIIAKVTRDREMDVLDAAYPQYGFAKHKGYP
EEEEEECCCCCCCCCEEECCCCEEHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCC
TKAHFEAIAEHGVFDQYRKSFKPVKALLEL
CHHHHHHHHHCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA