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The map label for this gene is epsD [H]

Identifier: 160873279

GI number: 160873279

Start: 181183

End: 183300

Strand: Direct

Name: epsD [H]

Synonym: Sbal195_0153

Alternate gene names: 160873279

Gene position: 181183-183300 (Clockwise)

Preceding gene: 160873278

Following gene: 160873280

Centisome position: 3.39

GC content: 47.17

Gene sequence:

>2118_bases
ATGAATAACAAAAGGATTCGACGCAAGCTGATTGCAGGGATTGTTGCGGGTGCAGCCATGTTCTCCTCCCAATTCGCTTG
GTCTGAACAGTATGCGGCCAACTTTAAGGGCACGGATATTCAAGAGTTTATCAACATAGTTGGTAAAAACTTGAACAAGA
CCATCATAGTCGACCCGACGATCCGCGGCAAAATCAACGTTCGCAGTTATGATCTGCTGAACGATGAACAGTATTACCAG
TTTTTCCTCAACGTCTTACAAGTCTACGGTTATGCCATCGTCGAGATGGAAAATAACGTCATCAAAGTCATTAAAGACAA
AGACGCTAAAACTGCAGCAATCCGAGTGGCTAACGATGCCGAACCTGGAATAGGCGATGAGATGGTCACGCGTATAGTGG
CGCTGTATAACACTGAGGCCAAACAATTAGCTCCGCTGTTACGCCAATTAAATGATAACGCGGGTGGCGGTAACGTAGTG
AACTACGATCCCTCCAACGTCTTGATGTTGTCTGGTCGTGCTGCTGTGGTGAACAAGTTAGTGGAAATTGTCCGCCGCGT
AGATAAACAGGGCGACACCTCAGTACAAGTGGTGCCGTTAGAGTTCGCCTCCGCCGGTGAAATGGTACGAATTATTGATA
CCCTTTATCGCGCCACGGCTAACCAATCTCAAATGCCAGGCCAAGCGCCGAAAGTGGTCGCCGACGAACGTATCAACGCT
GTGGTTGTTAGCGGCGACGAAAAGAGCCGCCAACGTGTGGTTGAGCTCATTCATCGTCTCGATGCCGAGCAAGCCAGTAC
AGGCAACACTAAGGTGCGTTACTTACGTTATGCCAAGGCCGAAGATTTAGTTGAAGTGCTGACAGGTTTTGCCCAGAAAT
TAGAGGGCGAAAAAGATCCAAACGCTCAAGCTGCAGGTGGTAAACGCCGCAATGAAATCAATATTATGGCCCATGCTGAG
ACCAATGCCTTAGTGATCAGTGCCGAACCCGATCAAATGCGTACTATCGAGAGCGTGATTAATCAGCTCGATATTCGTCG
TGCTCAAGTGTTAGTCGAAGCGATTATCGTGGAAGTGGCTGAAGGCGATAACGTTGGTTTTGGGGTCCAATGGGCGTCTA
AATCAGGGCTCGGCACTCAGTTTAATAACTTAGGCCCAACCATAGGTGAGATTGGCGCAGGGATTTGGCAGGCGCAGGAT
GTGAAAGCTTCCCAAACTTGTACTGGTTCGGGTGATAATCAGACCTGTACAGATAACCCTGACACTAAAGGCGATGTGAC
ACTACTTGCCCAAGCTTTAGGCAAAGTGAACGGTATGGCTTGGGGTGTGGCCATGGGCGACTTTGGTGCCTTAATTCAAG
CCGTGTCGAGTGACACTAACTCAAACGTACTGGCGACACCGTCGATTACCACTTTAGATAACCAAGAAGCGTCTTTCATC
GTCGGTGATGAAGTGCCTATTCTGACGGGCTCTACCGCCAGTTCGAGCAACAGTAACCCATTCCAAACCGTTGAACGTAA
AGAGGTTGGGGTTAAGCTGAAAGTGGTGCCGCAGATCAACGAAGGTAATGCGGTTAAGCTGACGATTGAACAGGAAGTGT
CAGGGGTTAACGGTAACACAGGTGTGGATATTTCCTTTGCGACTCGCCGTTTAACCACCACTGTTATGGCTGACTCAGGG
CAAATCGTGGTTCTGGGTGGTTTGATCAACGAAGAAGTACAAGAAAGCATACAAAAAGTACCATTCTTGGGTGATATCCC
TATCATTGGCCACTTATTTAAATCTTCTTCGAGCAAAAAGACCAAGAAAAACCTGATGATCTTCATCAAGCCAACCATTA
TCCGTGATGGCATCACAATGGAAGGGATTGCTGGGCGCAAATATAACTATTTCAGAGCATTACAACTTGAGCAGCAAGAA
CGTGGCGTCAACTTAATGCCAAATACTAAAGTGCCTGTGTTGGAAGAATGGAATCAATCAGAGTATTTACCGCCAGAAGT
TAACGCGATTTTAGAGCGTTATAAAGAAGGCAAAGGTTTAGATGCCCAGATGCGCCAAACGGATCCGACCTTAAAGTCAC
TGGAAGAAAACAAGAATAAAGATAAAACCAATGAGTGA

Upstream 100 bases:

>100_bases
CGAGTTAACCGAAGTATCAATTATGGTTGAACGGGAAGGACAATTGGTTGAAATCATGTTTAGTTTGCCGCAATAACACG
CGTTAGAGGAAAGAAAAAGA

Downstream 100 bases:

>100_bases
AATACAATTATCCCAAGTCGATGACCTCAGCCAAGTCTCCAATGAGCTAGGTCTGGAAGCTGAAGGTGATGAGGTGTTTC
GTTCGAGCAGTAAAGAGCGT

Product: general secretion pathway protein D

Products: NA

Alternate protein names: Cholera toxin secretion protein epsD [H]

Number of amino acids: Translated: 705; Mature: 705

Protein sequence:

>705_residues
MNNKRIRRKLIAGIVAGAAMFSSQFAWSEQYAANFKGTDIQEFINIVGKNLNKTIIVDPTIRGKINVRSYDLLNDEQYYQ
FFLNVLQVYGYAIVEMENNVIKVIKDKDAKTAAIRVANDAEPGIGDEMVTRIVALYNTEAKQLAPLLRQLNDNAGGGNVV
NYDPSNVLMLSGRAAVVNKLVEIVRRVDKQGDTSVQVVPLEFASAGEMVRIIDTLYRATANQSQMPGQAPKVVADERINA
VVVSGDEKSRQRVVELIHRLDAEQASTGNTKVRYLRYAKAEDLVEVLTGFAQKLEGEKDPNAQAAGGKRRNEINIMAHAE
TNALVISAEPDQMRTIESVINQLDIRRAQVLVEAIIVEVAEGDNVGFGVQWASKSGLGTQFNNLGPTIGEIGAGIWQAQD
VKASQTCTGSGDNQTCTDNPDTKGDVTLLAQALGKVNGMAWGVAMGDFGALIQAVSSDTNSNVLATPSITTLDNQEASFI
VGDEVPILTGSTASSSNSNPFQTVERKEVGVKLKVVPQINEGNAVKLTIEQEVSGVNGNTGVDISFATRRLTTTVMADSG
QIVVLGGLINEEVQESIQKVPFLGDIPIIGHLFKSSSSKKTKKNLMIFIKPTIIRDGITMEGIAGRKYNYFRALQLEQQE
RGVNLMPNTKVPVLEEWNQSEYLPPEVNAILERYKEGKGLDAQMRQTDPTLKSLEENKNKDKTNE

Sequences:

>Translated_705_residues
MNNKRIRRKLIAGIVAGAAMFSSQFAWSEQYAANFKGTDIQEFINIVGKNLNKTIIVDPTIRGKINVRSYDLLNDEQYYQ
FFLNVLQVYGYAIVEMENNVIKVIKDKDAKTAAIRVANDAEPGIGDEMVTRIVALYNTEAKQLAPLLRQLNDNAGGGNVV
NYDPSNVLMLSGRAAVVNKLVEIVRRVDKQGDTSVQVVPLEFASAGEMVRIIDTLYRATANQSQMPGQAPKVVADERINA
VVVSGDEKSRQRVVELIHRLDAEQASTGNTKVRYLRYAKAEDLVEVLTGFAQKLEGEKDPNAQAAGGKRRNEINIMAHAE
TNALVISAEPDQMRTIESVINQLDIRRAQVLVEAIIVEVAEGDNVGFGVQWASKSGLGTQFNNLGPTIGEIGAGIWQAQD
VKASQTCTGSGDNQTCTDNPDTKGDVTLLAQALGKVNGMAWGVAMGDFGALIQAVSSDTNSNVLATPSITTLDNQEASFI
VGDEVPILTGSTASSSNSNPFQTVERKEVGVKLKVVPQINEGNAVKLTIEQEVSGVNGNTGVDISFATRRLTTTVMADSG
QIVVLGGLINEEVQESIQKVPFLGDIPIIGHLFKSSSSKKTKKNLMIFIKPTIIRDGITMEGIAGRKYNYFRALQLEQQE
RGVNLMPNTKVPVLEEWNQSEYLPPEVNAILERYKEGKGLDAQMRQTDPTLKSLEENKNKDKTNE
>Mature_705_residues
MNNKRIRRKLIAGIVAGAAMFSSQFAWSEQYAANFKGTDIQEFINIVGKNLNKTIIVDPTIRGKINVRSYDLLNDEQYYQ
FFLNVLQVYGYAIVEMENNVIKVIKDKDAKTAAIRVANDAEPGIGDEMVTRIVALYNTEAKQLAPLLRQLNDNAGGGNVV
NYDPSNVLMLSGRAAVVNKLVEIVRRVDKQGDTSVQVVPLEFASAGEMVRIIDTLYRATANQSQMPGQAPKVVADERINA
VVVSGDEKSRQRVVELIHRLDAEQASTGNTKVRYLRYAKAEDLVEVLTGFAQKLEGEKDPNAQAAGGKRRNEINIMAHAE
TNALVISAEPDQMRTIESVINQLDIRRAQVLVEAIIVEVAEGDNVGFGVQWASKSGLGTQFNNLGPTIGEIGAGIWQAQD
VKASQTCTGSGDNQTCTDNPDTKGDVTLLAQALGKVNGMAWGVAMGDFGALIQAVSSDTNSNVLATPSITTLDNQEASFI
VGDEVPILTGSTASSSNSNPFQTVERKEVGVKLKVVPQINEGNAVKLTIEQEVSGVNGNTGVDISFATRRLTTTVMADSG
QIVVLGGLINEEVQESIQKVPFLGDIPIIGHLFKSSSSKKTKKNLMIFIKPTIIRDGITMEGIAGRKYNYFRALQLEQQE
RGVNLMPNTKVPVLEEWNQSEYLPPEVNAILERYKEGKGLDAQMRQTDPTLKSLEENKNKDKTNE

Specific function: Required for secretion of cholera toxin through the outer membrane [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=663, Percent_Identity=43.8914027149321, Blast_Score=543, Evalue=1e-155,
Organism=Escherichia coli, GI1789793, Length=302, Percent_Identity=24.1721854304636, Blast_Score=76, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845
- InterPro:   IPR001814 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 76917; Mature: 76917

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: PS00300 SRP54

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNKRIRRKLIAGIVAGAAMFSSQFAWSEQYAANFKGTDIQEFINIVGKNLNKTIIVDPT
CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHCCCCCCEEEECCC
IRGKINVRSYDLLNDEQYYQFFLNVLQVYGYAIVEMENNVIKVIKDKDAKTAAIRVANDA
CCCEEEEEEEECCCCHHHHHHHHHHHHHHCEEEEEECCCEEEEEECCCCCEEEEEEECCC
EPGIGDEMVTRIVALYNTEAKQLAPLLRQLNDNAGGGNVVNYDPSNVLMLSGRAAVVNKL
CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCCHHHHHHH
VEIVRRVDKQGDTSVQVVPLEFASAGEMVRIIDTLYRATANQSQMPGQAPKVVADERINA
HHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCE
VVVSGDEKSRQRVVELIHRLDAEQASTGNTKVRYLRYAKAEDLVEVLTGFAQKLEGEKDP
EEEECCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCC
NAQAAGGKRRNEINIMAHAETNALVISAEPDQMRTIESVINQLDIRRAQVLVEAIIVEVA
CCCCCCCCCCCEEEEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
EGDNVGFGVQWASKSGLGTQFNNLGPTIGEIGAGIWQAQDVKASQTCTGSGDNQTCTDNP
CCCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DTKGDVTLLAQALGKVNGMAWGVAMGDFGALIQAVSSDTNSNVLATPSITTLDNQEASFI
CCCCHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCEEE
VGDEVPILTGSTASSSNSNPFQTVERKEVGVKLKVVPQINEGNAVKLTIEQEVSGVNGNT
ECCCCEEEECCCCCCCCCCCHHHHHHHHCCEEEEEEEEECCCCEEEEEEECCCCCCCCCC
GVDISFATRRLTTTVMADSGQIVVLGGLINEEVQESIQKVPFLGDIPIIGHLFKSSSSKK
CEEEEEHHHEEEEEEEECCCCEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCC
TKKNLMIFIKPTIIRDGITMEGIAGRKYNYFRALQLEQQERGVNLMPNTKVPVLEEWNQS
CCCCEEEEEEEEEEECCCEECCCCCCCCCEEEEEEEHHHHCCCCCCCCCCCCHHHCCCCC
EYLPPEVNAILERYKEGKGLDAQMRQTDPTLKSLEENKNKDKTNE
CCCCHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MNNKRIRRKLIAGIVAGAAMFSSQFAWSEQYAANFKGTDIQEFINIVGKNLNKTIIVDPT
CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHCCCCCCEEEECCC
IRGKINVRSYDLLNDEQYYQFFLNVLQVYGYAIVEMENNVIKVIKDKDAKTAAIRVANDA
CCCEEEEEEEECCCCHHHHHHHHHHHHHHCEEEEEECCCEEEEEECCCCCEEEEEEECCC
EPGIGDEMVTRIVALYNTEAKQLAPLLRQLNDNAGGGNVVNYDPSNVLMLSGRAAVVNKL
CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEECCCCEEEECCCHHHHHHH
VEIVRRVDKQGDTSVQVVPLEFASAGEMVRIIDTLYRATANQSQMPGQAPKVVADERINA
HHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCE
VVVSGDEKSRQRVVELIHRLDAEQASTGNTKVRYLRYAKAEDLVEVLTGFAQKLEGEKDP
EEEECCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCC
NAQAAGGKRRNEINIMAHAETNALVISAEPDQMRTIESVINQLDIRRAQVLVEAIIVEVA
CCCCCCCCCCCEEEEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
EGDNVGFGVQWASKSGLGTQFNNLGPTIGEIGAGIWQAQDVKASQTCTGSGDNQTCTDNP
CCCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DTKGDVTLLAQALGKVNGMAWGVAMGDFGALIQAVSSDTNSNVLATPSITTLDNQEASFI
CCCCHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCEEE
VGDEVPILTGSTASSSNSNPFQTVERKEVGVKLKVVPQINEGNAVKLTIEQEVSGVNGNT
ECCCCEEEECCCCCCCCCCCHHHHHHHHCCEEEEEEEEECCCCEEEEEEECCCCCCCCCC
GVDISFATRRLTTTVMADSGQIVVLGGLINEEVQESIQKVPFLGDIPIIGHLFKSSSSKK
CEEEEEHHHEEEEEEEECCCCEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCC
TKKNLMIFIKPTIIRDGITMEGIAGRKYNYFRALQLEQQERGVNLMPNTKVPVLEEWNQS
CCCCEEEEEEEEEEECCCEECCCCCCCCCEEEEEEEHHHHCCCCCCCCCCCCHHHCCCCC
EYLPPEVNAILERYKEGKGLDAQMRQTDPTLKSLEENKNKDKTNE
CCCCHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]