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The map label for this gene is rimN [H]

Identifier: 160873162

GI number: 160873162

Start: 40357

End: 40923

Strand: Direct

Name: rimN [H]

Synonym: Sbal195_0036

Alternate gene names: 160873162

Gene position: 40357-40923 (Clockwise)

Preceding gene: 160873161

Following gene: 160873163

Centisome position: 0.75

GC content: 47.27

Gene sequence:

>567_bases
ATGTTGCAGCTACACCCATCCGATATAAAAGACATCATTCTTCAAGGTGGCGTTATCGCTTATCCAACCGAGGCAGTTTA
TGGCCTAGGTTGCGACCCTGATAACGACACTGCTATTCTAAAGTTATTGGCGGTAAAACAGCGCCCATGGCAAAAAGGAC
TGATCTTAGTCGCCAGTGATTTTCAGCAGCTTTTAGCTTATGTTGATGAATCGCAATTAACGGCTGAGCAGCTTGAATTT
GCATTTTCCAAGTGGCCAGGGCCTTTTACCTTTGTCATGCCAATCAAAGCACAGGTTTCAAAATACCTCTGTGGCGAATT
TGACTCTATCGCAGTGCGAGTGTCGGCCCATGCTGGGGTACAAGCCCTGTGCCGCGCGCTTAATAAACCTTTAGTGTCGA
CCAGTGCTAACCTTGCAGGTGAAGATCCCGCATTAACTGCCGCTGAAATCCTCGCTGATTTTACCGGTAAAATCGATGCA
CTGGTATTAGGCGAACTCGGCGAACAACGTCAGCCCTCGACCATTATCGATGCACGAAGCGGCAAAATTTTACGAAATGG
ACAATGA

Upstream 100 bases:

>100_bases
CTTAGTGCGGCTTGAGTATAATCCCCAACCGACCGTTAGATGGGGCGGCGAAGATTCGGGTAATGACAAAAACTGACAAG
ACGAATAAGGTGATTTGATA

Downstream 100 bases:

>100_bases
GCAAACCAATAATAAGGATAACAAGATGAGTGTGCCTGATGCTGCAGTGGTAAAAGCGTTTTTACTCGATTTACAAAACC
GAATTTGTGCCGGTTTACAG

Product: Sua5/YciO/YrdC/YwlC family protein

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN [H]

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MLQLHPSDIKDIILQGGVIAYPTEAVYGLGCDPDNDTAILKLLAVKQRPWQKGLILVASDFQQLLAYVDESQLTAEQLEF
AFSKWPGPFTFVMPIKAQVSKYLCGEFDSIAVRVSAHAGVQALCRALNKPLVSTSANLAGEDPALTAAEILADFTGKIDA
LVLGELGEQRQPSTIIDARSGKILRNGQ

Sequences:

>Translated_188_residues
MLQLHPSDIKDIILQGGVIAYPTEAVYGLGCDPDNDTAILKLLAVKQRPWQKGLILVASDFQQLLAYVDESQLTAEQLEF
AFSKWPGPFTFVMPIKAQVSKYLCGEFDSIAVRVSAHAGVQALCRALNKPLVSTSANLAGEDPALTAAEILADFTGKIDA
LVLGELGEQRQPSTIIDARSGKILRNGQ
>Mature_188_residues
MLQLHPSDIKDIILQGGVIAYPTEAVYGLGCDPDNDTAILKLLAVKQRPWQKGLILVASDFQQLLAYVDESQLTAEQLEF
AFSKWPGPFTFVMPIKAQVSKYLCGEFDSIAVRVSAHAGVQALCRALNKPLVSTSANLAGEDPALTAAEILADFTGKIDA
LVLGELGEQRQPSTIIDARSGKILRNGQ

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine [H]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI2367210, Length=177, Percent_Identity=52.5423728813559, Blast_Score=188, Evalue=2e-49,
Organism=Escherichia coli, GI87081864, Length=170, Percent_Identity=30.5882352941176, Blast_Score=79, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6321269, Length=174, Percent_Identity=28.735632183908, Blast_Score=72, Evalue=8e-14,
Organism=Drosophila melanogaster, GI78707274, Length=173, Percent_Identity=31.7919075144509, Blast_Score=76, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 20281; Mature: 20281

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQLHPSDIKDIILQGGVIAYPTEAVYGLGCDPDNDTAILKLLAVKQRPWQKGLILVASD
CCCCCHHHHHHHHHCCCEEEECCHHEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEEHHH
FQQLLAYVDESQLTAEQLEFAFSKWPGPFTFVMPIKAQVSKYLCGEFDSIAVRVSAHAGV
HHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCCEEEEEECCCCH
QALCRALNKPLVSTSANLAGEDPALTAAEILADFTGKIDALVLGELGEQRQPSTIIDARS
HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHEEEECCCCCCCCCCEEEECCC
GKILRNGQ
CCEEECCC
>Mature Secondary Structure
MLQLHPSDIKDIILQGGVIAYPTEAVYGLGCDPDNDTAILKLLAVKQRPWQKGLILVASD
CCCCCHHHHHHHHHCCCEEEECCHHEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEEHHH
FQQLLAYVDESQLTAEQLEFAFSKWPGPFTFVMPIKAQVSKYLCGEFDSIAVRVSAHAGV
HHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCCEEEEEECCCCH
QALCRALNKPLVSTSANLAGEDPALTAAEILADFTGKIDALVLGELGEQRQPSTIIDARS
HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHEEEECCCCCCCCCCEEEECCC
GKILRNGQ
CCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA