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The map label for this gene is yvkB

Identifier: 16080573

GI number: 16080573

Start: 3618364

End: 3618933

Strand: Direct

Name: yvkB

Synonym: BSU35200

Alternate gene names: 16080573

Gene position: 3618364-3618933 (Clockwise)

Preceding gene: 16080572

Following gene: 16080574

Centisome position: 85.83

GC content: 41.93

Gene sequence:

>570_bases
TTGAGACCGACAAACAAGAGAATCCTTGATGCTGCCATGCAGCTGCTCGTCAAAAAAGGATATCGCGCAACGACTACAAA
AGAAATTGCAGAAAAAGCAAATGTAAGTGAAGCGACGATTTTCAGGAACTTTAAAAACAAACAAGGACTAGTTGAGGCTT
TGCTTTCTCAGCATTCTTCAAACAGAGGCAGCATTTTGGAACAAACAGAAGGGGATTTGTACAAAGACCTGCTTCATATC
GGAACCTGTCTCTTGGAGGAGCTCGAACATAGAAAAGATATCATTAAAATCAGCTTTCGTGAACCGGCCATGTTTCAGGA
TGTCATTAACCACGTCACTGAATATCCCCAATCTATGAAACAGCTATTGGTTGATTATCTCAAAACGATGGGTGAGAAAG
GGGTTATTCAGACAGGAAATGAAGCGGAACATGCCGACGTGTTCATGTCGATTATCTTCGGTTATTTCATTCACCGTCTC
CACTTAGGAGACCGGGTCATATCAATGCCCCAGGAAAAAATGCTGGAGCATAGCACAGCTCTATTTGTCAAAGGAATTTC
TGCTGATTAA

Upstream 100 bases:

>100_bases
AATCACAGTTGTCAGCCGGTCCTGATGCGTCCCCCTCTTTCTTATACAAGCGGGGCGGGTGTATACTTGTCCTGCCAGTA
TATTCGTGAGGTGAAACGTA

Downstream 100 bases:

>100_bases
CTCCTTGGCATAATAAAAAGGAGGATCCCAATGAGCTCAAGAAAAGAATGGGCGCTGATCGTCTCGCTATTATTGGGGGC
CATTCTGGTTCCCATTAACT

Product: TetR/AcrR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MRPTNKRILDAAMQLLVKKGYRATTTKEIAEKANVSEATIFRNFKNKQGLVEALLSQHSSNRGSILEQTEGDLYKDLLHI
GTCLLEELEHRKDIIKISFREPAMFQDVINHVTEYPQSMKQLLVDYLKTMGEKGVIQTGNEAEHADVFMSIIFGYFIHRL
HLGDRVISMPQEKMLEHSTALFVKGISAD

Sequences:

>Translated_189_residues
MRPTNKRILDAAMQLLVKKGYRATTTKEIAEKANVSEATIFRNFKNKQGLVEALLSQHSSNRGSILEQTEGDLYKDLLHI
GTCLLEELEHRKDIIKISFREPAMFQDVINHVTEYPQSMKQLLVDYLKTMGEKGVIQTGNEAEHADVFMSIIFGYFIHRL
HLGDRVISMPQEKMLEHSTALFVKGISAD
>Mature_189_residues
MRPTNKRILDAAMQLLVKKGYRATTTKEIAEKANVSEATIFRNFKNKQGLVEALLSQHSSNRGSILEQTEGDLYKDLLHI
GTCLLEELEHRKDIIKISFREPAMFQDVINHVTEYPQSMKQLLVDYLKTMGEKGVIQTGNEAEHADVFMSIIFGYFIHRL
HLGDRVISMPQEKMLEHSTALFVKGISAD

Specific function: Repressor For The Uidrabc (Gusrabc) Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YVKB_BACSU (O34643)

Other databases:

- EMBL:   AF017113
- EMBL:   AL009126
- PIR:   H70042
- RefSeq:   NP_391400.1
- ProteinModelPortal:   O34643
- SMR:   O34643
- EnsemblBacteria:   EBBACT00000003061
- GeneID:   936683
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU35200
- NMPDR:   fig|224308.1.peg.3526
- GenoList:   BSU35200
- GeneTree:   EBGT00050000000420
- HOGENOM:   HBG338353
- OMA:   ATIFRNF
- ProtClustDB:   CLSK887946
- BioCyc:   BSUB:BSU35200-MONOMER
- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647
- Gene3D:   G3DSA:1.10.357.10
- PRINTS:   PR00455

Pfam domain/function: PF00440 TetR_N; SSF46689 Homeodomain_like; SSF48498 TetR_like_C

EC number: NA

Molecular weight: Translated: 21534; Mature: 21534

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: PS01081 HTH_TETR_1; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPTNKRILDAAMQLLVKKGYRATTTKEIAEKANVSEATIFRNFKNKQGLVEALLSQHSS
CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHCCC
NRGSILEQTEGDLYKDLLHIGTCLLEELEHRKDIIKISFREPAMFQDVINHVTEYPQSMK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHH
QLLVDYLKTMGEKGVIQTGNEAEHADVFMSIIFGYFIHRLHLGDRVISMPQEKMLEHSTA
HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
LFVKGISAD
HHHCCCCCC
>Mature Secondary Structure
MRPTNKRILDAAMQLLVKKGYRATTTKEIAEKANVSEATIFRNFKNKQGLVEALLSQHSS
CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHCCC
NRGSILEQTEGDLYKDLLHIGTCLLEELEHRKDIIKISFREPAMFQDVINHVTEYPQSMK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHH
QLLVDYLKTMGEKGVIQTGNEAEHADVFMSIIFGYFIHRLHLGDRVISMPQEKMLEHSTA
HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
LFVKGISAD
HHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377