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The map label for this gene is yvrL

Identifier: 16080378

GI number: 16080378

Start: 3411684

End: 3412094

Strand: Direct

Name: yvrL

Synonym: BSU33250

Alternate gene names: 16080378

Gene position: 3411684-3412094 (Clockwise)

Preceding gene: 16080377

Following gene: 16080386

Centisome position: 80.93

GC content: 44.04

Gene sequence:

>411_bases
GTGAAACATCAAAACCCTTCAAAACGCTTATTGCGGCTCTCCATAAAGTACTTGCTGGCCGCAGCAGCAGTGGTGTTGAC
CTATTTTGCTGTCATCTATATATTGTTTTCTTTAGCGGGAACGAGCTACCGCTCAGCAGCTCATGTCCTGCTTTTTGCCG
TGGTATTCCTTGTTCTCGGATTATGCTTTGAACCATTTGAACGGCTGATGATACATAGCTTTACATTTTTCAAGACAGGA
AAACGTCTATTCATTCTCCTTGCTGGCATCGTACAGCTGCTGTTTTTGTGGATGACTGCTCATACAACAGACCAATTGAT
CAGCGACATCTGGCTGTCCACCACAGAAGAAATGATTGTCGCAGCCGTTTTTTTGATTTTAGACAAATGCAACTCGGCTC
TTCCCAGCTAA

Upstream 100 bases:

>100_bases
AGAAAAGCACCCAGTAGTGAAAAAGAAATGCAGTAAATAAAAGACTTGCGGCTTGCAGAGAGCACTCGTTCTCTGCAAGC
CTTCATAAGGAGCTGAACCA

Downstream 100 bases:

>100_bases
AAAAAGAACGCATTCCAATTGGATGCGTTCTTTTTATTCATAGCGAAGCGCGTCTACAGGCTGAAGCTTCGAAGCCTTGA
TAGACGGAAGCAAGCCGAAG

Product: integral inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MKHQNPSKRLLRLSIKYLLAAAAVVLTYFAVIYILFSLAGTSYRSAAHVLLFAVVFLVLGLCFEPFERLMIHSFTFFKTG
KRLFILLAGIVQLLFLWMTAHTTDQLISDIWLSTTEEMIVAAVFLILDKCNSALPS

Sequences:

>Translated_136_residues
MKHQNPSKRLLRLSIKYLLAAAAVVLTYFAVIYILFSLAGTSYRSAAHVLLFAVVFLVLGLCFEPFERLMIHSFTFFKTG
KRLFILLAGIVQLLFLWMTAHTTDQLISDIWLSTTEEMIVAAVFLILDKCNSALPS
>Mature_136_residues
MKHQNPSKRLLRLSIKYLLAAAAVVLTYFAVIYILFSLAGTSYRSAAHVLLFAVVFLVLGLCFEPFERLMIHSFTFFKTG
KRLFILLAGIVQLLFLWMTAHTTDQLISDIWLSTTEEMIVAAVFLILDKCNSALPS

Specific function: Negatively regulates RNA polymerase sigma factor sigO- dependent transcription. Prevents the expression or secretion of oxdC under nonstress conditions. May act as an anti-sigma factor

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YVRL_BACSU (O34686)

Other databases:

- EMBL:   AJ223978
- EMBL:   AL009126
- PIR:   F70047
- RefSeq:   NP_391205.1
- ProteinModelPortal:   O34686
- EnsemblBacteria:   EBBACT00000004049
- GeneID:   935982
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU33250
- NMPDR:   fig|224308.1.peg.3331
- GenoList:   BSU33250
- GeneTree:   EBGT00050000002979
- HOGENOM:   HBG338314
- OMA:   ERLMIHS
- ProtClustDB:   CLSK887865
- BioCyc:   BSUB:BSU33250-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15361; Mature: 15361

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x125f81b0)-; HASH(0x12248f9c)-; HASH(0x12189914)-; HASH(0x1250a650)-;

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHQNPSKRLLRLSIKYLLAAAAVVLTYFAVIYILFSLAGTSYRSAAHVLLFAVVFLVLG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LCFEPFERLMIHSFTFFKTGKRLFILLAGIVQLLFLWMTAHTTDQLISDIWLSTTEEMIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVFLILDKCNSALPS
HHHHHHHHHHHHCCCH
>Mature Secondary Structure
MKHQNPSKRLLRLSIKYLLAAAAVVLTYFAVIYILFSLAGTSYRSAAHVLLFAVVFLVLG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LCFEPFERLMIHSFTFFKTGKRLFILLAGIVQLLFLWMTAHTTDQLISDIWLSTTEEMIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVFLILDKCNSALPS
HHHHHHHHHHHHCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377