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The map label for this gene is yuxN

Identifier: 16080356

GI number: 16080356

Start: 3388113

End: 3388988

Strand: Direct

Name: yuxN

Synonym: BSU33030

Alternate gene names: 16080356

Gene position: 3388113-3388988 (Clockwise)

Preceding gene: 255767751

Following gene: 255767754

Centisome position: 80.37

GC content: 39.84

Gene sequence:

>876_bases
TTGAAGGAAAAAGAAAAACTGATTATTGAAACAGCCTTAAAACTATTTGCCCAAAAAGGATACAACTCAACATCAGTCCA
GGAAATCGCAAAAGAATGCAAAATATCTAAAGGCGCTTTTTATATTTATTTTCCTTCGAAAGAAGCGCTTCTTCTCTCTA
TGCTGAACTACTATTATGATAAAACGTTTACCCGAATTTTAAATATTAAAACGAAGGGCGACAGCCCCAGAACGGCTTAC
CGTAAACAGCTGACCGTCCTCTATGAAAACATTCTTGAACACAAAGATTTTATCAGCATGCAGTTGAAGGAGGGTTCTCT
GCCTTACACAGAAGAAGTGGAGCAATGCGCAAAAAAAATCCGCCAGTCCTCACTTCAATTTCATATCGACAGCCTGCTGA
ACATCTATGGAAAAAAAGCGGAACCGTACACTGCTGAGCTTTGTTTTTTAATAGAGGGCATCAGCCAGATTTACCTGGAA
TGCATGATTTTGCTCGGGTACACTGTGAAGCCGTCTCAATTAGCTGATATCATTATGAATCGAATTGATGATATGGTAAA
AGGCATGTCTGAACGAAACGATAAGCCTTTCATCACATTGGAAGAGGCGAGCTCTTTATTCGGACCTCTTACGCACGGAC
GGCCTGACCCGCTGACTGAATCAATTGTGAAAAGCCTACGTGACAAAATTAACAGCTTAAACACAAACTCCTCTCTTGAA
TTATCGGAGAGCTTGGACATACTTGAAGCAGAAATGAAGAAAAAAACACCGAAGCTGGCGATCATAAAAGGAATGATTCA
TAATCTGACGGAGTCTGAAGCTCTCGCCAAAGATGCGGAACAGCTTAAATATTTATTAAAACAGCAACATATTTAG

Upstream 100 bases:

>100_bases
TGATAAAAAAACAAGTTACAATAAGGTTAATTTTATAACAGACGGTGTGACTATATGGTCATATCCTAGCAGGCCTCCGG
GCTCCGAAAGGGTGGAACCA

Downstream 100 bases:

>100_bases
AAGAACGGCTGCTTAAAAAGCAGCCGTTCTTCCTATTACGCCTTTGGTTTTACCATGTCTTCCGGCTTAACCATTTCGTT
AAATTGCTCCTCTGTCAGCA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MKEKEKLIIETALKLFAQKGYNSTSVQEIAKECKISKGAFYIYFPSKEALLLSMLNYYYDKTFTRILNIKTKGDSPRTAY
RKQLTVLYENILEHKDFISMQLKEGSLPYTEEVEQCAKKIRQSSLQFHIDSLLNIYGKKAEPYTAELCFLIEGISQIYLE
CMILLGYTVKPSQLADIIMNRIDDMVKGMSERNDKPFITLEEASSLFGPLTHGRPDPLTESIVKSLRDKINSLNTNSSLE
LSESLDILEAEMKKKTPKLAIIKGMIHNLTESEALAKDAEQLKYLLKQQHI

Sequences:

>Translated_291_residues
MKEKEKLIIETALKLFAQKGYNSTSVQEIAKECKISKGAFYIYFPSKEALLLSMLNYYYDKTFTRILNIKTKGDSPRTAY
RKQLTVLYENILEHKDFISMQLKEGSLPYTEEVEQCAKKIRQSSLQFHIDSLLNIYGKKAEPYTAELCFLIEGISQIYLE
CMILLGYTVKPSQLADIIMNRIDDMVKGMSERNDKPFITLEEASSLFGPLTHGRPDPLTESIVKSLRDKINSLNTNSSLE
LSESLDILEAEMKKKTPKLAIIKGMIHNLTESEALAKDAEQLKYLLKQQHI
>Mature_291_residues
MKEKEKLIIETALKLFAQKGYNSTSVQEIAKECKISKGAFYIYFPSKEALLLSMLNYYYDKTFTRILNIKTKGDSPRTAY
RKQLTVLYENILEHKDFISMQLKEGSLPYTEEVEQCAKKIRQSSLQFHIDSLLNIYGKKAEPYTAELCFLIEGISQIYLE
CMILLGYTVKPSQLADIIMNRIDDMVKGMSERNDKPFITLEEASSLFGPLTHGRPDPLTESIVKSLRDKINSLNTNSSLE
LSESLDILEAEMKKKTPKLAIIKGMIHNLTESEALAKDAEQLKYLLKQQHI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): YUXN_BACSU (P40950)

Other databases:

- EMBL:   AJ223978
- EMBL:   Z93941
- EMBL:   AL009126
- EMBL:   X01701
- PIR:   F70025
- RefSeq:   NP_391183.1
- ProteinModelPortal:   P40950
- SMR:   P40950
- EnsemblBacteria:   EBBACT00000001274
- GeneID:   935945
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU33030
- NMPDR:   fig|224308.1.peg.3309
- GenoList:   BSU33030
- GeneTree:   EBGT00050000000417
- HOGENOM:   HBG341453
- OMA:   AIIKGMI
- ProtClustDB:   CLSK2460958
- BioCyc:   BSUB:BSU33030-MONOMER
- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR001647
- Gene3D:   G3DSA:1.10.357.10
- PRINTS:   PR00455

Pfam domain/function: PF00440 TetR_N; SSF46689 Homeodomain_like

EC number: NA

Molecular weight: Translated: 33311; Mature: 33311

Theoretical pI: Translated: 7.94; Mature: 7.94

Prosite motif: PS01081 HTH_TETR_1; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEKEKLIIETALKLFAQKGYNSTSVQEIAKECKISKGAFYIYFPSKEALLLSMLNYYYD
CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHH
KTFTRILNIKTKGDSPRTAYRKQLTVLYENILEHKDFISMQLKEGSLPYTEEVEQCAKKI
HHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
RQSSLQFHIDSLLNIYGKKAEPYTAELCFLIEGISQIYLECMILLGYTVKPSQLADIIMN
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
RIDDMVKGMSERNDKPFITLEEASSLFGPLTHGRPDPLTESIVKSLRDKINSLNTNSSLE
HHHHHHHHHHHCCCCCEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
LSESLDILEAEMKKKTPKLAIIKGMIHNLTESEALAKDAEQLKYLLKQQHI
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKEKEKLIIETALKLFAQKGYNSTSVQEIAKECKISKGAFYIYFPSKEALLLSMLNYYYD
CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHH
KTFTRILNIKTKGDSPRTAYRKQLTVLYENILEHKDFISMQLKEGSLPYTEEVEQCAKKI
HHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
RQSSLQFHIDSLLNIYGKKAEPYTAELCFLIEGISQIYLECMILLGYTVKPSQLADIIMN
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
RIDDMVKGMSERNDKPFITLEEASSLFGPLTHGRPDPLTESIVKSLRDKINSLNTNSSLE
HHHHHHHHHHHCCCCCEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
LSESLDILEAEMKKKTPKLAIIKGMIHNLTESEALAKDAEQLKYLLKQQHI
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9639930; 9353931; 9384377; 3923430