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The map label for this gene is yusT

Identifier: 16080344

GI number: 16080344

Start: 3377893

End: 3378780

Strand: Direct

Name: yusT

Synonym: BSU32920

Alternate gene names: 16080344

Gene position: 3377893-3378780 (Clockwise)

Preceding gene: 16080340

Following gene: 16080350

Centisome position: 80.13

GC content: 47.64

Gene sequence:

>888_bases
ATGGAAAGCGGAGATTTACGTGTGTTTCAAATGGTAGCTCGTGAAGGGACCATTACGAAAGCAGCCCTGCAGCTTGGCTA
TGTACAATCGAATGTCACGGCCAGAATTCAACAATTGGAAGCTGAGCTGGGTACCACACTGTTTTTGCGCCATAATCGGG
GCATGACACTTTCTGCAAGCGGAAAATTGCTGCTGGACTACGCAAATAAAATTATAGGCCTTCTTGATGAAGCGTCTAAA
GCGCTCTCATCCTCCGCAGAACCAAGCGGGCCGCTTATGATCGGCTGCACTCAGACAACCGCCGCGGTAAGGCTTCCAAA
GCTTCTGGCATCTTATTATGAAGAACATCCAAACGTCCAGCTGTCTTTAACAACAGGACATACGCAATTTCTCCTTGATA
AAGTTCTTCGTTATGAATTGGATGGCGCGTTTATCGGATGCGAATGCCATCATCCTGAGCTCGAATCCTATCCTGCGTTT
GAGGAAGAACCAGTAGTTGTTTCGGCTGCCTCCGTGCCCGATGTTGAGGAAGCCATCACAAAGCCGATTCTCGTTTACAG
CACAGGCTGTTCGTATCGAGAAACACTTGAAAAATGGCTGCGTTCCGTCGGTGTCACACAGCCGGTCATTATGGAATTTG
GGACGCTTGAAGCAATTATCGGCGGGGTTACAGCAGGTCTTGGCATCTCGTTGCTGCCAAGAACGGTTGTGCAGAAACAT
GAAGCAGAAGGATCAATTCGATTGTACCCGCTGCCTGAAGCTCTCAGCCAGATGAAAACAGAGTTTATTGTTCGAAAAGA
TTCGTTTATCAGCAGCGCGCTGAGAACCTTTATGGATTCCTTTACGCCAGTTAAAACGGCTGAATCACAAAAAAGCAGTC
TGCTATAA

Upstream 100 bases:

>100_bases
TTCTGATTCCATTGTAATCCAGCTTTGATGTTACGTATAATGATTGTTAAAGATACTAGATATCACTCAGATTGATAGTA
AACGAACGGAGGAGTTCAAA

Downstream 100 bases:

>100_bases
TGAACAGACTGCTTTTTGGCTATTGTTTGTTTCGATGCGCTTCATTTAATTCCTTAATATGCTGAATGATCTCTTTAATG
CCCTGCTTCGCGTCGGGGTA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MESGDLRVFQMVAREGTITKAALQLGYVQSNVTARIQQLEAELGTTLFLRHNRGMTLSASGKLLLDYANKIIGLLDEASK
ALSSSAEPSGPLMIGCTQTTAAVRLPKLLASYYEEHPNVQLSLTTGHTQFLLDKVLRYELDGAFIGCECHHPELESYPAF
EEEPVVVSAASVPDVEEAITKPILVYSTGCSYRETLEKWLRSVGVTQPVIMEFGTLEAIIGGVTAGLGISLLPRTVVQKH
EAEGSIRLYPLPEALSQMKTEFIVRKDSFISSALRTFMDSFTPVKTAESQKSSLL

Sequences:

>Translated_295_residues
MESGDLRVFQMVAREGTITKAALQLGYVQSNVTARIQQLEAELGTTLFLRHNRGMTLSASGKLLLDYANKIIGLLDEASK
ALSSSAEPSGPLMIGCTQTTAAVRLPKLLASYYEEHPNVQLSLTTGHTQFLLDKVLRYELDGAFIGCECHHPELESYPAF
EEEPVVVSAASVPDVEEAITKPILVYSTGCSYRETLEKWLRSVGVTQPVIMEFGTLEAIIGGVTAGLGISLLPRTVVQKH
EAEGSIRLYPLPEALSQMKTEFIVRKDSFISSALRTFMDSFTPVKTAESQKSSLL
>Mature_295_residues
MESGDLRVFQMVAREGTITKAALQLGYVQSNVTARIQQLEAELGTTLFLRHNRGMTLSASGKLLLDYANKIIGLLDEASK
ALSSSAEPSGPLMIGCTQTTAAVRLPKLLASYYEEHPNVQLSLTTGHTQFLLDKVLRYELDGAFIGCECHHPELESYPAF
EEEPVVVSAASVPDVEEAITKPILVYSTGCSYRETLEKWLRSVGVTQPVIMEFGTLEAIIGGVTAGLGISLLPRTVVQKH
EAEGSIRLYPLPEALSQMKTEFIVRKDSFISSALRTFMDSFTPVKTAESQKSSLL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1787806, Length=271, Percent_Identity=33.5793357933579, Blast_Score=171, Evalue=5e-44,
Organism=Escherichia coli, GI1788481, Length=290, Percent_Identity=31.0344827586207, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI87082132, Length=287, Percent_Identity=28.5714285714286, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI157672245, Length=286, Percent_Identity=26.5734265734266, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI1790208, Length=250, Percent_Identity=28.8, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787879, Length=291, Percent_Identity=26.8041237113402, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI145693105, Length=285, Percent_Identity=25.6140350877193, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787530, Length=287, Percent_Identity=22.2996515679443, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788296, Length=263, Percent_Identity=28.5171102661597, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790262, Length=304, Percent_Identity=25.6578947368421, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI2367136, Length=250, Percent_Identity=26.4, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788626, Length=228, Percent_Identity=27.1929824561404, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788887, Length=247, Percent_Identity=27.5303643724696, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787601, Length=274, Percent_Identity=24.8175182481752, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788297, Length=237, Percent_Identity=24.8945147679325, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788748, Length=287, Percent_Identity=23.6933797909408, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787589, Length=250, Percent_Identity=26.8, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1790399, Length=247, Percent_Identity=25.1012145748988, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1789506, Length=179, Percent_Identity=30.1675977653631, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): YUST_BACSU (O32186)

Other databases:

- EMBL:   AL009126
- PIR:   E70022
- RefSeq:   NP_391171.1
- ProteinModelPortal:   O32186
- SMR:   O32186
- EnsemblBacteria:   EBBACT00000002601
- GeneID:   938601
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU32920
- NMPDR:   fig|224308.1.peg.3297
- GenoList:   BSU32920
- GeneTree:   EBGT00070000031761
- HOGENOM:   HBG685425
- OMA:   SELITEY
- PhylomeDB:   O32186
- ProtClustDB:   CLSK887850
- BioCyc:   BSUB:BSU32920-MONOMER
- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00039

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate

EC number: NA

Molecular weight: Translated: 32229; Mature: 32229

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESGDLRVFQMVAREGTITKAALQLGYVQSNVTARIQQLEAELGTTLFLRHNRGMTLSAS
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEECC
GKLLLDYANKIIGLLDEASKALSSSAEPSGPLMIGCTQTTAAVRLPKLLASYYEEHPNVQ
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEE
LSLTTGHTQFLLDKVLRYELDGAFIGCECHHPELESYPAFEEEPVVVSAASVPDVEEAIT
EEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHC
KPILVYSTGCSYRETLEKWLRSVGVTQPVIMEFGTLEAIIGGVTAGLGISLLPRTVVQKH
CCEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
EAEGSIRLYPLPEALSQMKTEFIVRKDSFISSALRTFMDSFTPVKTAESQKSSLL
CCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCC
>Mature Secondary Structure
MESGDLRVFQMVAREGTITKAALQLGYVQSNVTARIQQLEAELGTTLFLRHNRGMTLSAS
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEECC
GKLLLDYANKIIGLLDEASKALSSSAEPSGPLMIGCTQTTAAVRLPKLLASYYEEHPNVQ
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEE
LSLTTGHTQFLLDKVLRYELDGAFIGCECHHPELESYPAFEEEPVVVSAASVPDVEEAIT
EEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHC
KPILVYSTGCSYRETLEKWLRSVGVTQPVIMEFGTLEAIIGGVTAGLGISLLPRTVVQKH
CCEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
EAEGSIRLYPLPEALSQMKTEFIVRKDSFISSALRTFMDSFTPVKTAESQKSSLL
CCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377