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The map label for this gene is ytdP

Identifier: 16080067

GI number: 16080067

Start: 3083441

End: 3085759

Strand: Direct

Name: ytdP

Synonym: BSU30150

Alternate gene names: 16080067

Gene position: 3083441-3085759 (Clockwise)

Preceding gene: 16080059

Following gene: 16080078

Centisome position: 73.14

GC content: 43.77

Gene sequence:

>2319_bases
ATGGGGGGTTTTATGAAAAGAAGCCAATACAAGTTTTACTACAAACTGATCACGTTTTTCTGCCTGCTCAGCACCATTCC
GGTTATTTTGGTCGGATTATTTTCGTACGAGCACTCTCAGAAAACGGCTATTTCCAACGTTTCGGAGGAAAAATTCGACA
CACTCCAGCAGACCCAGCAAAGCATCGAGCATATATTGAAAACCGTCGATCACTCTTTAACCCACTATGTGAGTTCGCCG
CCTCTCCTTCGCACATTGTCCGAGCCTTTGCACTCAGACCAATTTCAAATCTATAACCAAGTGAACCAAGAGCTCAATTA
TCTGCAAAGCTTTGATACCGATCTGTCCAACATGACGTTAGTCAGTTATACGAAAAAATGGTACATGAACAATTCCGGTT
TGTACCGTTTGAATACAGACACTCTTCATGAAGCAGCCTCAGCGTACACGAAACAAAAAGCGAGCCGCTCCTATTGGACG
CTTGAGGAAAACAATCATTTGATTTCAACCAAAGAAGGCACAGCAGAAAACTGCCGCTACAATATCAATTTAATTAAGCA
GCTTCCTTTGAACAGCACAAATACAAAGGGATTGGCCGCCGCAAGCATCCCGAGCTGTTCGCTTGTCAAAAATATGCCCG
GCTATTCAAACGCCAACAACCTGTTTATCATCGATGAAAAAGGCCTCATCATCCTTCATAACAATATGTCTGACGTTGGT
GAATCTCTTCATAACGACGGCTTTGTCCAAAAAGTGCTGGCGCAAACGGCCAATAGCGGACAGTTTGAAACAGTGATTGA
CCGGATTCATTATAAAGTCACCTATCAAAAATCTGACTATAATGCATGGACTTATTTTTCTCTCGTTTCCCTGCCTGAGT
TAAAAAAAGAAGCCAAATCAATCGGCTGGATCACTTTTGCAGTATGCCTCATTTTGTTAACGCTTTCATTGCTGTTCTCT
TGGCTTGGCTCCCGCCATTTTTACAAGCCGATCAGGGTGCTTTACGAATCATTCGCAAGACATGGAGCCATACAAGAGAA
ACAACAGCCTCCTCAAAATGAATTTGAGTTAATTGAACAGAGCTTTAAGCAGCTGAAGGACAGAAATGACGACCTTGAAG
AAACGATGAAGCAGCAGGCCACTCATCTGCAGCAATATTTTATGGTCAGGCTTATGCTTGGAAAACTGACGGATGAGGAG
GTTGATAACCGTTTTGAAAGCCTCGGCTTAAAGCAAAATTGGCGGCACCTTGCCCTGCTTGTGCTCCAAATTGACACACT
GAATCATACGCCTTATGAGAAAAAAGATATGGATCTGCTTTTGTTTGCCGTCAACAGCCTGATTGAGCGCAACATCCCGA
CGGACAAACATCTTGCCCCCGCCGTAGTTGACAAACAGCAGGCGACGATTTTGATCAATCAAAGCGGGACAAAGGAAGAA
TTCATGGCTGAGCTGAATGAGACTGCAAGGATGATTCAGGAAAAAGCGGAAGCTGAGCTGCAGCTGTCTGTCAGCATCGG
CATCAGCCAGCCGTTTGATGTGCTGACAAAAGCGAAAACAGCCTATGCGGAAGGCTCAGAAGCGTTGAAATATCGGCTGA
AAGCGGAAAACAAGTCGATCATCTTTTACGAAGACCTTGACCAGAAAAAAACCTTCAAAACCCATTTTCCAAAGCAGCTT
CAGCATGAGCTGTTCGATGCTGTCAAAGCAGGAGACAAGGAGAAAGCGGATAAATGCCTGCACGCGATTTTACAAGCCAT
TTTCACCCAGAACACCAACCCGTATCAATTTCAAATCGCCATCGCCCGTTTTTTGAACCATGTGATTGAGCTGATGCATG
TGCTTGGGATCGAATTGTTTGAGCTTGAAGAAAACAAAATGCTGTATGACCAAATTTTTGAGCTGAAAACGTTCGAGGAT
ACCGAAAACTGGCTAAAGAATGAGTTTATTGATCCGATGACAGACAAAGTGAACGCCCGCGCGGATGCCCAGTACAAAAA
TATTTCCGACAACATCATTCATATCATCCATCATGAGTTTGAATCCGAATTGACACTGGACGAAATCGCACGCAGGCTGC
ATTACAACCCAAATTATTTAAGCAGTATTTTCAAAAAAGAAATGGGAATTTCATTCAGCGAGTATGTCTCAAGCTACCGA
CACCATATGGCGAAAAGCTGGCTTGCCGAAACCGACATGGCGGTCAAGGACATTGCCGAAAAGCTGAAATATAAAAACTC
CCAAAACTTCATCAGATCATTTAAGAAGCTGGAAGGGATTACACCGGGAAACTACCGCCAGCAAAAAAGAAGCATGTAA

Upstream 100 bases:

>100_bases
CGGTCCACCTGAAAAAAAGACACCGATATTAGAAAATGATTATTGACAATATCTATCAATCTTTGGATTAATTGTATTAA
GGTGAAGTGGATGTTATGAA

Downstream 100 bases:

>100_bases
AAAACCCAAAACCGCTTGCGCGTTTTGGGTTTTTCCAATGTTATTTTGCTTGTTTAAACGCTTCTTCGTATTCCTGAATA
ATTTGTTTTCCTCCGCTTGA

Product: membrane bound transcriptional regulator (AraC/XylS family)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 772; Mature: 771

Protein sequence:

>772_residues
MGGFMKRSQYKFYYKLITFFCLLSTIPVILVGLFSYEHSQKTAISNVSEEKFDTLQQTQQSIEHILKTVDHSLTHYVSSP
PLLRTLSEPLHSDQFQIYNQVNQELNYLQSFDTDLSNMTLVSYTKKWYMNNSGLYRLNTDTLHEAASAYTKQKASRSYWT
LEENNHLISTKEGTAENCRYNINLIKQLPLNSTNTKGLAAASIPSCSLVKNMPGYSNANNLFIIDEKGLIILHNNMSDVG
ESLHNDGFVQKVLAQTANSGQFETVIDRIHYKVTYQKSDYNAWTYFSLVSLPELKKEAKSIGWITFAVCLILLTLSLLFS
WLGSRHFYKPIRVLYESFARHGAIQEKQQPPQNEFELIEQSFKQLKDRNDDLEETMKQQATHLQQYFMVRLMLGKLTDEE
VDNRFESLGLKQNWRHLALLVLQIDTLNHTPYEKKDMDLLLFAVNSLIERNIPTDKHLAPAVVDKQQATILINQSGTKEE
FMAELNETARMIQEKAEAELQLSVSIGISQPFDVLTKAKTAYAEGSEALKYRLKAENKSIIFYEDLDQKKTFKTHFPKQL
QHELFDAVKAGDKEKADKCLHAILQAIFTQNTNPYQFQIAIARFLNHVIELMHVLGIELFELEENKMLYDQIFELKTFED
TENWLKNEFIDPMTDKVNARADAQYKNISDNIIHIIHHEFESELTLDEIARRLHYNPNYLSSIFKKEMGISFSEYVSSYR
HHMAKSWLAETDMAVKDIAEKLKYKNSQNFIRSFKKLEGITPGNYRQQKRSM

Sequences:

>Translated_772_residues
MGGFMKRSQYKFYYKLITFFCLLSTIPVILVGLFSYEHSQKTAISNVSEEKFDTLQQTQQSIEHILKTVDHSLTHYVSSP
PLLRTLSEPLHSDQFQIYNQVNQELNYLQSFDTDLSNMTLVSYTKKWYMNNSGLYRLNTDTLHEAASAYTKQKASRSYWT
LEENNHLISTKEGTAENCRYNINLIKQLPLNSTNTKGLAAASIPSCSLVKNMPGYSNANNLFIIDEKGLIILHNNMSDVG
ESLHNDGFVQKVLAQTANSGQFETVIDRIHYKVTYQKSDYNAWTYFSLVSLPELKKEAKSIGWITFAVCLILLTLSLLFS
WLGSRHFYKPIRVLYESFARHGAIQEKQQPPQNEFELIEQSFKQLKDRNDDLEETMKQQATHLQQYFMVRLMLGKLTDEE
VDNRFESLGLKQNWRHLALLVLQIDTLNHTPYEKKDMDLLLFAVNSLIERNIPTDKHLAPAVVDKQQATILINQSGTKEE
FMAELNETARMIQEKAEAELQLSVSIGISQPFDVLTKAKTAYAEGSEALKYRLKAENKSIIFYEDLDQKKTFKTHFPKQL
QHELFDAVKAGDKEKADKCLHAILQAIFTQNTNPYQFQIAIARFLNHVIELMHVLGIELFELEENKMLYDQIFELKTFED
TENWLKNEFIDPMTDKVNARADAQYKNISDNIIHIIHHEFESELTLDEIARRLHYNPNYLSSIFKKEMGISFSEYVSSYR
HHMAKSWLAETDMAVKDIAEKLKYKNSQNFIRSFKKLEGITPGNYRQQKRSM
>Mature_771_residues
GGFMKRSQYKFYYKLITFFCLLSTIPVILVGLFSYEHSQKTAISNVSEEKFDTLQQTQQSIEHILKTVDHSLTHYVSSPP
LLRTLSEPLHSDQFQIYNQVNQELNYLQSFDTDLSNMTLVSYTKKWYMNNSGLYRLNTDTLHEAASAYTKQKASRSYWTL
EENNHLISTKEGTAENCRYNINLIKQLPLNSTNTKGLAAASIPSCSLVKNMPGYSNANNLFIIDEKGLIILHNNMSDVGE
SLHNDGFVQKVLAQTANSGQFETVIDRIHYKVTYQKSDYNAWTYFSLVSLPELKKEAKSIGWITFAVCLILLTLSLLFSW
LGSRHFYKPIRVLYESFARHGAIQEKQQPPQNEFELIEQSFKQLKDRNDDLEETMKQQATHLQQYFMVRLMLGKLTDEEV
DNRFESLGLKQNWRHLALLVLQIDTLNHTPYEKKDMDLLLFAVNSLIERNIPTDKHLAPAVVDKQQATILINQSGTKEEF
MAELNETARMIQEKAEAELQLSVSIGISQPFDVLTKAKTAYAEGSEALKYRLKAENKSIIFYEDLDQKKTFKTHFPKQLQ
HELFDAVKAGDKEKADKCLHAILQAIFTQNTNPYQFQIAIARFLNHVIELMHVLGIELFELEENKMLYDQIFELKTFEDT
ENWLKNEFIDPMTDKVNARADAQYKNISDNIIHIIHHEFESELTLDEIARRLHYNPNYLSSIFKKEMGISFSEYVSSYRH
HMAKSWLAETDMAVKDIAEKLKYKNSQNFIRSFKKLEGITPGNYRQQKRSM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1790391, Length=113, Percent_Identity=33.6283185840708, Blast_Score=67, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): YTDP_BACSU (O32071)

Other databases:

- EMBL:   AL009126
- PIR:   C69990
- RefSeq:   NP_390893.1
- ProteinModelPortal:   O32071
- SMR:   O32071
- EnsemblBacteria:   EBBACT00000000525
- GeneID:   936234
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU30150
- NMPDR:   fig|224308.1.peg.3018
- GenoList:   BSU30150
- GeneTree:   EBGT00050000000043
- HOGENOM:   HBG345175
- OMA:   NFIRSFK
- ProtClustDB:   CLSK872718
- BioCyc:   BSUB:BSU30150-MONOMER
- GO:   GO:0005622
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- Gene3D:   G3DSA:1.10.10.60
- SMART:   SM00342

Pfam domain/function: PF00165 HTH_AraC; SSF46689 Homeodomain_like

EC number: NA

Molecular weight: Translated: 89546; Mature: 89415

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS00041 HTH_ARAC_FAMILY_1; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x107677f0)-; HASH(0x11ba6e40)-;

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGFMKRSQYKFYYKLITFFCLLSTIPVILVGLFSYEHSQKTAISNVSEEKFDTLQQTQQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHH
SIEHILKTVDHSLTHYVSSPPLLRTLSEPLHSDQFQIYNQVNQELNYLQSFDTDLSNMTL
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHCCCH
VSYTKKWYMNNSGLYRLNTDTLHEAASAYTKQKASRSYWTLEENNHLISTKEGTAENCRY
HHHHHHHEECCCCEEEECHHHHHHHHHHHHHHHCCCCCEEEECCCCEEECCCCCCCCCEE
NINLIKQLPLNSTNTKGLAAASIPSCSLVKNMPGYSNANNLFIIDEKGLIILHNNMSDVG
EEEEHEECCCCCCCCCCCEECCCCCHHHHHCCCCCCCCCCEEEEECCCEEEEECCHHHHH
ESLHNDGFVQKVLAQTANSGQFETVIDRIHYKVTYQKSDYNAWTYFSLVSLPELKKEAKS
HHHCCCHHHHHHHHHHCCCCHHHHHHHHHHEEEEEEECCCCCCHHHHHHCCHHHHHHHHH
IGWITFAVCLILLTLSLLFSWLGSRHFYKPIRVLYESFARHGAIQEKQQPPQNEFELIEQ
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
SFKQLKDRNDDLEETMKQQATHLQQYFMVRLMLGKLTDEEVDNRFESLGLKQNWRHLALL
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHH
VLQIDTLNHTPYEKKDMDLLLFAVNSLIERNIPTDKHLAPAVVDKQQATILINQSGTKEE
EEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCEEEEEECCCCHHH
FMAELNETARMIQEKAEAELQLSVSIGISQPFDVLTKAKTAYAEGSEALKYRLKAENKSI
HHHHHHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHEECCCCEE
IFYEDLDQKKTFKTHFPKQLQHELFDAVKAGDKEKADKCLHAILQAIFTQNTNPYQFQIA
EEEECCCCHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEHHH
IARFLNHVIELMHVLGIELFELEENKMLYDQIFELKTFEDTENWLKNEFIDPMTDKVNAR
HHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHCCCC
ADAQYKNISDNIIHIIHHEFESELTLDEIARRLHYNPNYLSSIFKKEMGISFSEYVSSYR
CCCHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHH
HHMAKSWLAETDMAVKDIAEKLKYKNSQNFIRSFKKLEGITPGNYRQQKRSM
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHCCH
>Mature Secondary Structure 
GGFMKRSQYKFYYKLITFFCLLSTIPVILVGLFSYEHSQKTAISNVSEEKFDTLQQTQQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHH
SIEHILKTVDHSLTHYVSSPPLLRTLSEPLHSDQFQIYNQVNQELNYLQSFDTDLSNMTL
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHCCCH
VSYTKKWYMNNSGLYRLNTDTLHEAASAYTKQKASRSYWTLEENNHLISTKEGTAENCRY
HHHHHHHEECCCCEEEECHHHHHHHHHHHHHHHCCCCCEEEECCCCEEECCCCCCCCCEE
NINLIKQLPLNSTNTKGLAAASIPSCSLVKNMPGYSNANNLFIIDEKGLIILHNNMSDVG
EEEEHEECCCCCCCCCCCEECCCCCHHHHHCCCCCCCCCCEEEEECCCEEEEECCHHHHH
ESLHNDGFVQKVLAQTANSGQFETVIDRIHYKVTYQKSDYNAWTYFSLVSLPELKKEAKS
HHHCCCHHHHHHHHHHCCCCHHHHHHHHHHEEEEEEECCCCCCHHHHHHCCHHHHHHHHH
IGWITFAVCLILLTLSLLFSWLGSRHFYKPIRVLYESFARHGAIQEKQQPPQNEFELIEQ
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
SFKQLKDRNDDLEETMKQQATHLQQYFMVRLMLGKLTDEEVDNRFESLGLKQNWRHLALL
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHH
VLQIDTLNHTPYEKKDMDLLLFAVNSLIERNIPTDKHLAPAVVDKQQATILINQSGTKEE
EEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCEEEEEECCCCHHH
FMAELNETARMIQEKAEAELQLSVSIGISQPFDVLTKAKTAYAEGSEALKYRLKAENKSI
HHHHHHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHEECCCCEE
IFYEDLDQKKTFKTHFPKQLQHELFDAVKAGDKEKADKCLHAILQAIFTQNTNPYQFQIA
EEEECCCCHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEHHH
IARFLNHVIELMHVLGIELFELEENKMLYDQIFELKTFEDTENWLKNEFIDPMTDKVNAR
HHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHCCCC
ADAQYKNISDNIIHIIHHEFESELTLDEIARRLHYNPNYLSSIFKKEMGISFSEYVSSYR
CCCHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHH
HHMAKSWLAETDMAVKDIAEKLKYKNSQNFIRSFKKLEGITPGNYRQQKRSM
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377