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The map label for this gene is ytxB

Identifier: 16079949

GI number: 16079949

Start: 2962510

End: 2963151

Strand: Reverse

Name: ytxB

Synonym: BSU28970

Alternate gene names: 16079949

Gene position: 2963151-2962510 (Counterclockwise)

Preceding gene: 16079950

Following gene: 255767668

Centisome position: 70.29

GC content: 45.17

Gene sequence:

>642_bases
ATGAAACGAAAAACGGCTGTCAAATGGCTGGCAGTGCTTGCAGGTGCTGGTTTACTCTATTGGGGAAATAAAACGTATTT
GAATGTATCGCCGAAAGAAATCAGGGTATGGGTATTGTCGTTCGGAGTCTTTGCACCTCTGATGTTTATCGGGATATCCA
TCGTCAGGCCACTTGTTTTATTTCCGGTGTCTGTTATTTCAATAGCTGGCGGACTTGCGTTTGGCCCGCTTCTCGGCACG
CTTTATACGTTATTCGGTTCGATGTGCGCTTCAGCTGTTTCGTTTTTTGCGGCTGGTTTGTTTTCGGCGAAAAAGAACGG
GCATTACGAAAGGCTTGAAGCCATACAGAAGCAAATGGAGGATAACGGATTTTTCTATATCTTTCTTTTGAGAATCCTGC
CGATCAATTTTGATTTCGTCAGCTATGCGGCAGGCCTTTCCAATGTCAAAGCGCTGCCGTATTTTGCCGCAACGGCTGTG
GGAATCATCCCTGGGACGATTGCGCTTAATGTGCTGGGTGCGAGCTTTTTGGCTGGCAATCTGCCCGCTTTCTTTATGGT
GCTCGCTTTGTATATCGTGTTTATCTCATTGCCGTTCATCTTCAGAAAGAAAATGCAAAACTTGTTCCAAGAATCAAATT
AA

Upstream 100 bases:

>100_bases
AATGGAGCGGATATTATATTTGGCTGCTCCGATCCGCCTTGACGGAGAAAACCGCCGACATCCATAATTGCTGTGGTTCA
AAGGGGAAGGAACTGAGGGT

Downstream 100 bases:

>100_bases
GATTTGCCAATGACCTTTACGTCTATTTTAAAAACATCCCCCATATACTTGTAACAGATGCCGTAAGGGGGGACAAACAT
GCTTGAAATAATCTTTGAAG

Product: integral inner membrane protein

Products: NA

Alternate protein names: ORF-213

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MKRKTAVKWLAVLAGAGLLYWGNKTYLNVSPKEIRVWVLSFGVFAPLMFIGISIVRPLVLFPVSVISIAGGLAFGPLLGT
LYTLFGSMCASAVSFFAAGLFSAKKNGHYERLEAIQKQMEDNGFFYIFLLRILPINFDFVSYAAGLSNVKALPYFAATAV
GIIPGTIALNVLGASFLAGNLPAFFMVLALYIVFISLPFIFRKKMQNLFQESN

Sequences:

>Translated_213_residues
MKRKTAVKWLAVLAGAGLLYWGNKTYLNVSPKEIRVWVLSFGVFAPLMFIGISIVRPLVLFPVSVISIAGGLAFGPLLGT
LYTLFGSMCASAVSFFAAGLFSAKKNGHYERLEAIQKQMEDNGFFYIFLLRILPINFDFVSYAAGLSNVKALPYFAATAV
GIIPGTIALNVLGASFLAGNLPAFFMVLALYIVFISLPFIFRKKMQNLFQESN
>Mature_213_residues
MKRKTAVKWLAVLAGAGLLYWGNKTYLNVSPKEIRVWVLSFGVFAPLMFIGISIVRPLVLFPVSVISIAGGLAFGPLLGT
LYTLFGSMCASAVSFFAAGLFSAKKNGHYERLEAIQKQMEDNGFFYIFLLRILPINFDFVSYAAGLSNVKALPYFAATAV
GIIPGTIALNVLGASFLAGNLPAFFMVLALYIVFISLPFIFRKKMQNLFQESN

Specific function: Unknown

COG id: COG0398

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TVP38/TMEM64 family

Homologues:

Organism=Escherichia coli, GI87081964, Length=149, Percent_Identity=31.5436241610738, Blast_Score=77, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YTXB_BACSU (P06568)

Other databases:

- EMBL:   X04963
- EMBL:   Z75208
- EMBL:   AF008220
- EMBL:   AL009126
- PIR:   C24720
- RefSeq:   NP_390775.1
- ProteinModelPortal:   P06568
- EnsemblBacteria:   EBBACT00000003651
- GeneID:   937403
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU28970
- NMPDR:   fig|224308.1.peg.2900
- GenoList:   BSU28970
- GeneTree:   EBGT00050000001741
- HOGENOM:   HBG491708
- OMA:   NGFFYIF
- PhylomeDB:   P06568
- ProtClustDB:   CLSK887702
- BioCyc:   BSUB:BSU28970-MONOMER
- InterPro:   IPR015414

Pfam domain/function: PF09335 SNARE_assoc

EC number: NA

Molecular weight: Translated: 23331; Mature: 23331

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x117a41e0)-; HASH(0x11a62d2c)-; HASH(0x11a68510)-; HASH(0x111e3894)-; HASH(0x115a1f98)-; HASH(0x1179d1e0)-;

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRKTAVKWLAVLAGAGLLYWGNKTYLNVSPKEIRVWVLSFGVFAPLMFIGISIVRPLVL
CCCHHHHHHHHHHHCCCEEEECCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FPVSVISIAGGLAFGPLLGTLYTLFGSMCASAVSFFAAGLFSAKKNGHYERLEAIQKQME
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
DNGFFYIFLLRILPINFDFVSYAAGLSNVKALPYFAATAVGIIPGTIALNVLGASFLAGN
CCCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LPAFFMVLALYIVFISLPFIFRKKMQNLFQESN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
>Mature Secondary Structure
MKRKTAVKWLAVLAGAGLLYWGNKTYLNVSPKEIRVWVLSFGVFAPLMFIGISIVRPLVL
CCCHHHHHHHHHHHCCCEEEECCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FPVSVISIAGGLAFGPLLGTLYTLFGSMCASAVSFFAAGLFSAKKNGHYERLEAIQKQME
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
DNGFFYIFLLRILPINFDFVSYAAGLSNVKALPYFAATAVGIIPGTIALNVLGASFLAGN
CCCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LPAFFMVLALYIVFISLPFIFRKKMQNLFQESN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3027671; 8969504; 9387221; 9384377