Click here to switch to the map view.

The map label for this gene is yomF

Identifier: 16079197

GI number: 16079197

Start: 2259475

End: 2260296

Strand: Direct

Name: yomF

Synonym: BSU21380

Alternate gene names: 16079197

Gene position: 2259475-2260296 (Clockwise)

Preceding gene: 16079196

Following gene: 16079198

Centisome position: 53.6

GC content: 36.37

Gene sequence:

>822_bases
CTGGCTGATTTTGCTAAATTATATAATGATCCAATATTAAGTAAAAAGAGAATAGGTTCTGTTGAAGACCCCTATCTAAC
TTACAATGAAACATTGACAATATTTAATGGAAGAGCACTCCTAACTGAGATTCCGAACAGAGAATTTCGTGTTGAAGTTA
CTGGGGACAACAAGGAATGGCGAGAGATTGAAGATGGAGAACTTGACGACAACTATTTTAAGGTTGATTACCTTATGGGA
GTTGTCTTTTTTAATGCTTCAAATGAAGGAAAATCGCTAACCTTTAATTATAGTGGTGAAGGAGCTTCCTTCTTCCCTGC
CTCTCGAATTTGGATAAAACGACAAGGGAATATGGTTATTGAAACTCTTCAAGGACTTATCGATGAAGCTGAAGATACAA
TAATTCGAATGAATGAACGTATAGCTGAATGTGAACGAGTTACAAAACGATGCCAAGAAGTGACAGCCTGGTGTAGACAG
GCTACATCAAATTATGAAGAAGTTGTAGAAAACACAAGAAAAATTTATAAACCATCTGTCTATACCTATTCAGATATTTT
CACCTATTACCCAACCCCACAGATTGGTTGGACGGTGACTGTTAAAGAAACAAAAATCGTTTATCGATGGGATGGATTTG
AGTGGGTAGATATTGGAACTTCCGAAGTATATGAAGGTTTTAATATACTCCTAAGCGCAACAGAACCATTTAATGCAAAT
TATATCTGGTATAAGGATGCCTCTTTTTCACCTGAGAAAAAACGAGTTGTTGTTTCAGATACAGCACCAGATTCAGGACA
AGTATGGTACAAAACTGACTAA

Upstream 100 bases:

>100_bases
TCTATTTGTCACAGGCTCAGATAGTAACTGCAGAGGAAATAAATTAAACGTTAAATATATCTGGGAAGCCTACCAACAAA
ATTAACGGAGGTGAACTAAA

Downstream 100 bases:

>100_bases
GATCCCCTCCGGGATCTTTTTTATTGGAGGAAAGTTATGGCTGGTTTTTATAGATATGATCAAAATTTAGATAAATATGT
TCCGATGCCTGTTGAACTAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MADFAKLYNDPILSKKRIGSVEDPYLTYNETLTIFNGRALLTEIPNREFRVEVTGDNKEWREIEDGELDDNYFKVDYLMG
VVFFNASNEGKSLTFNYSGEGASFFPASRIWIKRQGNMVIETLQGLIDEAEDTIIRMNERIAECERVTKRCQEVTAWCRQ
ATSNYEEVVENTRKIYKPSVYTYSDIFTYYPTPQIGWTVTVKETKIVYRWDGFEWVDIGTSEVYEGFNILLSATEPFNAN
YIWYKDASFSPEKKRVVVSDTAPDSGQVWYKTD

Sequences:

>Translated_273_residues
MADFAKLYNDPILSKKRIGSVEDPYLTYNETLTIFNGRALLTEIPNREFRVEVTGDNKEWREIEDGELDDNYFKVDYLMG
VVFFNASNEGKSLTFNYSGEGASFFPASRIWIKRQGNMVIETLQGLIDEAEDTIIRMNERIAECERVTKRCQEVTAWCRQ
ATSNYEEVVENTRKIYKPSVYTYSDIFTYYPTPQIGWTVTVKETKIVYRWDGFEWVDIGTSEVYEGFNILLSATEPFNAN
YIWYKDASFSPEKKRVVVSDTAPDSGQVWYKTD
>Mature_272_residues
ADFAKLYNDPILSKKRIGSVEDPYLTYNETLTIFNGRALLTEIPNREFRVEVTGDNKEWREIEDGELDDNYFKVDYLMGV
VFFNASNEGKSLTFNYSGEGASFFPASRIWIKRQGNMVIETLQGLIDEAEDTIIRMNERIAECERVTKRCQEVTAWCRQA
TSNYEEVVENTRKIYKPSVYTYSDIFTYYPTPQIGWTVTVKETKIVYRWDGFEWVDIGTSEVYEGFNILLSATEPFNANY
IWYKDASFSPEKKRVVVSDTAPDSGQVWYKTD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YOMF_BACSU (O31979)

Other databases:

- EMBL:   AL009126
- RefSeq:   NP_390021.1
- ProteinModelPortal:   O31979
- EnsemblBacteria:   EBBACT00000003055
- GeneID:   939134
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU21380
- NMPDR:   fig|224308.1.peg.2144
- GenoList:   BSU21380
- BioCyc:   BSUB:BSU21380-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31750; Mature: 31619

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADFAKLYNDPILSKKRIGSVEDPYLTYNETLTIFNGRALLTEIPNREFRVEVTGDNKEW
CCCHHHHHCCCCCCHHHCCCCCCCEEEECCEEEEEECCEEEEECCCCEEEEEECCCCCHH
REIEDGELDDNYFKVDYLMGVVFFNASNEGKSLTFNYSGEGASFFPASRIWIKRQGNMVI
CCCCCCCCCCCEEEHEEEEEEEEEECCCCCCEEEEEECCCCCEECCCCEEEEEECCCCHH
ETLQGLIDEAEDTIIRMNERIAECERVTKRCQEVTAWCRQATSNYEEVVENTRKIYKPSV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
YTYSDIFTYYPTPQIGWTVTVKETKIVYRWDGFEWVDIGTSEVYEGFNILLSATEPFNAN
EEEEHEEEECCCCCCCEEEEEEEEEEEEEECCEEEEECCHHHHHCCEEEEEECCCCCCCC
YIWYKDASFSPEKKRVVVSDTAPDSGQVWYKTD
EEEEECCCCCCCCCEEEEECCCCCCCEEEEECC
>Mature Secondary Structure 
ADFAKLYNDPILSKKRIGSVEDPYLTYNETLTIFNGRALLTEIPNREFRVEVTGDNKEW
CCHHHHHCCCCCCHHHCCCCCCCEEEECCEEEEEECCEEEEECCCCEEEEEECCCCCHH
REIEDGELDDNYFKVDYLMGVVFFNASNEGKSLTFNYSGEGASFFPASRIWIKRQGNMVI
CCCCCCCCCCCEEEHEEEEEEEEEECCCCCCEEEEEECCCCCEECCCCEEEEEECCCCHH
ETLQGLIDEAEDTIIRMNERIAECERVTKRCQEVTAWCRQATSNYEEVVENTRKIYKPSV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
YTYSDIFTYYPTPQIGWTVTVKETKIVYRWDGFEWVDIGTSEVYEGFNILLSATEPFNAN
EEEEHEEEECCCCCCCEEEEEEEEEEEEEECCEEEEECCHHHHHCCEEEEEECCCCCCCC
YIWYKDASFSPEKKRVVVSDTAPDSGQVWYKTD
EEEEECCCCCCCCCEEEEECCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377