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The map label for this gene is yefB

Identifier: 16077742

GI number: 16077742

Start: 738995

End: 739897

Strand: Reverse

Name: yefB

Synonym: BSU06740

Alternate gene names: 16077742

Gene position: 739897-738995 (Counterclockwise)

Preceding gene: 16077747

Following gene: 16077738

Centisome position: 17.55

GC content: 31.45

Gene sequence:

>903_bases
TTGTATAACGAAGGGGTCACTAGTCCCTCGCAGCTTGCCCGCAAAAAGAACGCTACTGACAAATGGCACGGATCTTCAAT
AAGAAAAATTCTCGAAAATCCTCACTATACTGGGACACTACAACAATGTAGAGAATATAGACCGAGTGTTACCAGTAAAA
GAAGAAGGTCAGTTAACCTAGAAAACCAAATAATTATTGAAAAAAGCCACGAACCAATCATACCTTTAGAAGACTTTCTT
ATTGTACAAGAGATTTTAATAACTAGAAAAAGAAGGAGACCTCAAGCTGAAGTACATCTCTTTACAAATACTGCGGTTTG
CAAAGATTGCAGGAGGTCAATGCATTTTAAAAAGAATCGAAAAGGTTATGTTTGTGGAAGTTATAATAAACATGGTTTAA
AAGCATGTAGTGATCATTACGTAAGTGAAATAGATTTAACTGATAAAGTAATAACCAACCTAAATAAGATATATTTGAAA
TTCAGTAAGGAAAATTATTTTAAAGAATTAAGTGAAAAAGCGTTAAAGTACAAAGAAAAAATCGAATCTAAGATAATCGA
AATTAATGAAAAATTAAACGATAAAAAGAGAGATAAATCCAATTTAGTTATCTCTCTTGCTAATGGTGTTATATCTAAAG
AAGATTACCAATTAGCCATAAATATCACCAATGAAGATATTTCAAATTTTGAAACTACCCTTCACCAACTATCTAAGGAC
CTAGAATTTCAAAAGATTGAAAAAGAAATAATTGATTTTAAAAAGAGCTTAGATAAATTCATGAAGGAAGGTACACTTAC
CCCCGAAATGCTTCATTTGTTAGTAGATGAAATAGAAGTACATGCAAATGGAACCATTGAAATCAATTATCGTTTTAGAG
AACCAACAGTTCCATCAGCATAG

Upstream 100 bases:

>100_bases
CATATCTCTCTCAAATTCAGCAAACGCAGAGAAAATAGTAAATATTAGAATCTTTTCAGAATATATTGCTGGAAAAGGCT
TTGATGCAATAGCAAGGGGA

Downstream 100 bases:

>100_bases
ATTTTTGACTATTTATTCTTTTAATTTTATCAACACACAGCACTCCACATGATTCGTATGCGGAAACATATCCACAGGCT
GCACTTCGCGCGTCACGTAC

Product: site-specific recombinase / invertase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MYNEGVTSPSQLARKKNATDKWHGSSIRKILENPHYTGTLQQCREYRPSVTSKRRRSVNLENQIIIEKSHEPIIPLEDFL
IVQEILITRKRRRPQAEVHLFTNTAVCKDCRRSMHFKKNRKGYVCGSYNKHGLKACSDHYVSEIDLTDKVITNLNKIYLK
FSKENYFKELSEKALKYKEKIESKIIEINEKLNDKKRDKSNLVISLANGVISKEDYQLAINITNEDISNFETTLHQLSKD
LEFQKIEKEIIDFKKSLDKFMKEGTLTPEMLHLLVDEIEVHANGTIEINYRFREPTVPSA

Sequences:

>Translated_300_residues
MYNEGVTSPSQLARKKNATDKWHGSSIRKILENPHYTGTLQQCREYRPSVTSKRRRSVNLENQIIIEKSHEPIIPLEDFL
IVQEILITRKRRRPQAEVHLFTNTAVCKDCRRSMHFKKNRKGYVCGSYNKHGLKACSDHYVSEIDLTDKVITNLNKIYLK
FSKENYFKELSEKALKYKEKIESKIIEINEKLNDKKRDKSNLVISLANGVISKEDYQLAINITNEDISNFETTLHQLSKD
LEFQKIEKEIIDFKKSLDKFMKEGTLTPEMLHLLVDEIEVHANGTIEINYRFREPTVPSA
>Mature_300_residues
MYNEGVTSPSQLARKKNATDKWHGSSIRKILENPHYTGTLQQCREYRPSVTSKRRRSVNLENQIIIEKSHEPIIPLEDFL
IVQEILITRKRRRPQAEVHLFTNTAVCKDCRRSMHFKKNRKGYVCGSYNKHGLKACSDHYVSEIDLTDKVITNLNKIYLK
FSKENYFKELSEKALKYKEKIESKIIEINEKLNDKKRDKSNLVISLANGVISKEDYQLAINITNEDISNFETTLHQLSKD
LEFQKIEKEIIDFKKSLDKFMKEGTLTPEMLHLLVDEIEVHANGTIEINYRFREPTVPSA

Specific function: Unknown

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 recombinase domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YEFB_BACSU (O34574)

Other databases:

- EMBL:   AF012532
- EMBL:   AL009126
- PIR:   F69793
- RefSeq:   NP_388556.1
- EnsemblBacteria:   EBBACT00000002712
- GeneID:   938745
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU06740
- NMPDR:   fig|224308.1.peg.675
- GenoList:   BSU06740
- BioCyc:   BSUB:BSU06740-MONOMER
- InterPro:   IPR013831
- InterPro:   IPR011109
- Gene3D:   G3DSA:3.40.50.1110

Pfam domain/function: PF07508 Recombinase

EC number: NA

Molecular weight: Translated: 35047; Mature: 35047

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYNEGVTSPSQLARKKNATDKWHGSSIRKILENPHYTGTLQQCREYRPSVTSKRRRSVNL
CCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHCCCC
ENQIIIEKSHEPIIPLEDFLIVQEILITRKRRRPQAEVHLFTNTAVCKDCRRSMHFKKNR
CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCC
KGYVCGSYNKHGLKACSDHYVSEIDLTDKVITNLNKIYLKFSKENYFKELSEKALKYKEK
CCCEECCCCCCHHHHHHHHHHHHCCHHHHHHHCHHHHEEEECHHHHHHHHHHHHHHHHHH
IESKIIEINEKLNDKKRDKSNLVISLANGVISKEDYQLAINITNEDISNFETTLHQLSKD
HHHHHHHHHHHHCHHHCCCCCEEEEECCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHC
LEFQKIEKEIIDFKKSLDKFMKEGTLTPEMLHLLVDEIEVHANGTIEINYRFREPTVPSA
CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEECCCEEEEEEEECCCCCCCC
>Mature Secondary Structure
MYNEGVTSPSQLARKKNATDKWHGSSIRKILENPHYTGTLQQCREYRPSVTSKRRRSVNL
CCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHCCCC
ENQIIIEKSHEPIIPLEDFLIVQEILITRKRRRPQAEVHLFTNTAVCKDCRRSMHFKKNR
CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCC
KGYVCGSYNKHGLKACSDHYVSEIDLTDKVITNLNKIYLKFSKENYFKELSEKALKYKEK
CCCEECCCCCCHHHHHHHHHHHHCCHHHHHHHCHHHHEEEECHHHHHHHHHHHHHHHHHH
IESKIIEINEKLNDKKRDKSNLVISLANGVISKEDYQLAINITNEDISNFETTLHQLSKD
HHHHHHHHHHHHCHHHCCCCCEEEEECCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHC
LEFQKIEKEIIDFKKSLDKFMKEGTLTPEMLHLLVDEIEVHANGTIEINYRFREPTVPSA
CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEECCCEEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377