Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
---|---|
Accession | NC_009972 |
Length | 6,346,587 |
Click here to switch to the map view.
The map label for this gene is fchA [H]
Identifier: 159900983
GI number: 159900983
Start: 5715949
End: 5716581
Strand: Direct
Name: fchA [H]
Synonym: Haur_4470
Alternate gene names: 159900983
Gene position: 5715949-5716581 (Clockwise)
Preceding gene: 159900982
Following gene: 159900984
Centisome position: 90.06
GC content: 53.55
Gene sequence:
>633_bases ATGACCCTATTACAGGTGCCAATCACCGAATTTTTGGATCAGCTTGCAACCAAGGAGCCAGTGCCAGGTGGCGGTAGTGT TGCAGCCGTGTCTGGGGCGATGGCCGCAGGCTTGATTTCAATGGTTTGTTCGTTGACCCTTGGCAAAAAGAAGTATGCCG AGGTCGAGGATGAAATTCGTGGTTTGATGGATCGCTCTGAGTCGTTGCGCCGTGAATTGCAAGAGCTAGCCGATGCTGAT GTTGAGGCATTTCGCCGTTTGAGCGCCGCCTATAAATTGCCGCGTGAAACTACTGCCGATATTGCGATTCGCCGCGATGC CATTCAAAAAGCCACGCGGATTGCGACTGATGTGCCGTTGCGGGCGGCTCAAGCGGCAGCGGCAATTTTGCCATTGTGTA GTCCAGCCGCTCAAAAAGGTAATTCAGCGGCAGTGAGCGATGTGGGCGTGGCGGTGCTCTTGGCTCAGGCGGCGGTACGC AGCGCCTTGCTCAACGTTGAAATTAATCTTAACACGCTCGAAGATCAATTTTATGTGCGCGAAACTCGTGCCGAGGTTGC CAAACTAACTGCAACCCTGCACGACGATACTGAGGCCGTGATGGCCTTAGTCAATCAACAGCTTCAGGGCTAA
Upstream 100 bases:
>100_bases GGGCCACTTTAAGCAACCATGGATCGGAATCGAGCGACTGCACGTATGCTTAGATGTGGTACGATCAGCATGAACTTGAT TCAACACCAAGGAGGTCGTT
Downstream 100 bases:
>100_bases ATGGTTTTCCAACGATGGCGGAGCGCAGGCTCCGCCTTTTATTTGTAAAGGATGTTATGACAGCGCTTTTGCTTGATGGT CGCGGGTTGGCCAAGGAATT
Product: formiminotransferase-cyclodeaminase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 210; Mature: 209
Protein sequence:
>210_residues MTLLQVPITEFLDQLATKEPVPGGGSVAAVSGAMAAGLISMVCSLTLGKKKYAEVEDEIRGLMDRSESLRRELQELADAD VEAFRRLSAAYKLPRETTADIAIRRDAIQKATRIATDVPLRAAQAAAAILPLCSPAAQKGNSAAVSDVGVAVLLAQAAVR SALLNVEINLNTLEDQFYVRETRAEVAKLTATLHDDTEAVMALVNQQLQG
Sequences:
>Translated_210_residues MTLLQVPITEFLDQLATKEPVPGGGSVAAVSGAMAAGLISMVCSLTLGKKKYAEVEDEIRGLMDRSESLRRELQELADAD VEAFRRLSAAYKLPRETTADIAIRRDAIQKATRIATDVPLRAAQAAAAILPLCSPAAQKGNSAAVSDVGVAVLLAQAAVR SALLNVEINLNTLEDQFYVRETRAEVAKLTATLHDDTEAVMALVNQQLQG >Mature_209_residues TLLQVPITEFLDQLATKEPVPGGGSVAAVSGAMAAGLISMVCSLTLGKKKYAEVEDEIRGLMDRSESLRRELQELADADV EAFRRLSAAYKLPRETTADIAIRRDAIQKATRIATDVPLRAAQAAAAILPLCSPAAQKGNSAAVSDVGVAVLLAQAAVRS ALLNVEINLNTLEDQFYVRETRAEVAKLTATLHDDTEAVMALVNQQLQG
Specific function: Required for both C1 and C2 metabolism [H]
COG id: COG3404
COG function: function code E; Methenyl tetrahydrofolate cyclohydrolase
Gene ontology:
Cell location: Membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the cyclodeaminase/cyclohydrolase family [H]
Homologues:
Organism=Homo sapiens, GI46255035, Length=150, Percent_Identity=32, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI11140815, Length=150, Percent_Identity=32, Blast_Score=71, Evalue=9e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007044 [H]
Pfam domain/function: PF04961 FTCD_C [H]
EC number: =3.5.4.9 [H]
Molecular weight: Translated: 22356; Mature: 22225
Theoretical pI: Translated: 4.78; Mature: 4.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLLQVPITEFLDQLATKEPVPGGGSVAAVSGAMAAGLISMVCSLTLGKKKYAEVEDEIR CCEEECCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH GLMDRSESLRRELQELADADVEAFRRLSAAYKLPRETTADIAIRRDAIQKATRIATDVPL HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCH RAAQAAAAILPLCSPAAQKGNSAAVSDVGVAVLLAQAAVRSALLNVEINLNTLEDQFYVR HHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHH ETRAEVAKLTATLHDDTEAVMALVNQQLQG HHHHHHHHHHHHHCCCHHHHHHHHHHHHCC >Mature Secondary Structure TLLQVPITEFLDQLATKEPVPGGGSVAAVSGAMAAGLISMVCSLTLGKKKYAEVEDEIR CEEECCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH GLMDRSESLRRELQELADADVEAFRRLSAAYKLPRETTADIAIRRDAIQKATRIATDVPL HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCH RAAQAAAAILPLCSPAAQKGNSAAVSDVGVAVLLAQAAVRSALLNVEINLNTLEDQFYVR HHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHH ETRAEVAKLTATLHDDTEAVMALVNQQLQG HHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7961516; 10215859 [H]