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The map label for this gene is rfbU [H]

Identifier: 159900951

GI number: 159900951

Start: 5678504

End: 5679649

Strand: Direct

Name: rfbU [H]

Synonym: Haur_4438

Alternate gene names: 159900951

Gene position: 5678504-5679649 (Clockwise)

Preceding gene: 159900950

Following gene: 159900971

Centisome position: 89.47

GC content: 53.93

Gene sequence:

>1146_bases
ATGCACATAGCAATTGATTACAATGCAGCGGTACGTCAGGGCGGCGGAATTGGCCGCTTTGTTCGCGAAATAACTCAGGT
CGCCGCGCAGGCAGCGCCTCAGCATCGCTTCTCGCTGTGGTATGCTGCGCGTGGGCTTGACCCAAAAAGTGCTCAGATGC
AGGCCTTGCATGAGCTTCAACGGCGTTTGCCCAATATCAAGCCGCGCCCAATTCCAATTAATGAGCGCTTGTTGACGATT
CTTTGGCAACGCTTGCGCATGCCCTTGCCTGTCGAGACGATTGTTGGGGCGGTTGATGTGGTGCATGGCACTGATTTTGT
GTTGCCGCCGACCAAGGCTAAAACGCTGCTCTCGATTCACGATTTTGCCTATATTATTCACCCTGAAACTGCGCCACCCG
AGTTGCGGCGTTATTTGGGTGGGGTTGTACCGCGCAATGTGCGCCGCGCCGACCATATTCACGTTAATTCGCGGGCAACC
AAAGCCGATATGGAGCGCTTGCTGGGCACAGCACCCTCTAAATCGACAATCGTTTATTCGGGTAGTGGCAGCGATTTTTA
TCCTCGGCCTGCGGCGGAAATTGCCGAAATGCGCCAACGCTTGGGCTTGCCCGAACGCTACCTTTTAAATGTAGGCACGG
TGCAGCCGCGCAAAAATGTTGAGCGTTTGATCGAAGCCTTTGGTCAATTGCCCGCTGAGTTGCGCAGCCAGCCCTTGGTG
ATCGGCGGCAAACGGGGTTGGTTGGCCGAGCCAATTTATGCAGCGGTACAACGCCATGGCCTTGAGCAAGCAGTCATCTT
CTTGGATTTTGTCAGCGACAGCGATTTGCCCAAGCTCTATAGCGGCGCGACCGCCATGGTTTATCCCTCGTTGTATGAAG
GATTTGGCGTGCCGATTGTTGAAGCTCAAGCATGTGGCACACCCGTGATTACCTCAACCATCTCCAGTTTGCCCGAAATT
GCTGGCAACGCGGCCTTGCTGGTCGATCCACATGATACAGCGGCACTAACAGCGGCTTTACAAAAAATTTTAACTGAGCC
TGATGTTTGCCAAAGCTTGGCTGAAGCAGGCCCACGCCAAGCCGCTAAATTTACGTGGGAAGGCACTGGTTTGGGCGTTT
TGGGGTTATACGAATTGCTGGGGTAA

Upstream 100 bases:

>100_bases
GGGGAATCATCACACCAGGATTATTCGATCGCCCCTCGCCCGCCGCAGTGGGCGAGGGGTTGGGGGTGAGGGGACGCAAT
ATGTTCTATGCTCTTAACTT

Downstream 100 bases:

>100_bases
CAAGCCTAAAATGCCAACGCCCCTAGCTCGCCATTGAACCAGGGGCGTAATTGATGCTTAGCCCAAACGTTCCAACACCG
CTGCCCCAACTTCTTTGGTT

Product: group 1 glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MHIAIDYNAAVRQGGGIGRFVREITQVAAQAAPQHRFSLWYAARGLDPKSAQMQALHELQRRLPNIKPRPIPINERLLTI
LWQRLRMPLPVETIVGAVDVVHGTDFVLPPTKAKTLLSIHDFAYIIHPETAPPELRRYLGGVVPRNVRRADHIHVNSRAT
KADMERLLGTAPSKSTIVYSGSGSDFYPRPAAEIAEMRQRLGLPERYLLNVGTVQPRKNVERLIEAFGQLPAELRSQPLV
IGGKRGWLAEPIYAAVQRHGLEQAVIFLDFVSDSDLPKLYSGATAMVYPSLYEGFGVPIVEAQACGTPVITSTISSLPEI
AGNAALLVDPHDTAALTAALQKILTEPDVCQSLAEAGPRQAAKFTWEGTGLGVLGLYELLG

Sequences:

>Translated_381_residues
MHIAIDYNAAVRQGGGIGRFVREITQVAAQAAPQHRFSLWYAARGLDPKSAQMQALHELQRRLPNIKPRPIPINERLLTI
LWQRLRMPLPVETIVGAVDVVHGTDFVLPPTKAKTLLSIHDFAYIIHPETAPPELRRYLGGVVPRNVRRADHIHVNSRAT
KADMERLLGTAPSKSTIVYSGSGSDFYPRPAAEIAEMRQRLGLPERYLLNVGTVQPRKNVERLIEAFGQLPAELRSQPLV
IGGKRGWLAEPIYAAVQRHGLEQAVIFLDFVSDSDLPKLYSGATAMVYPSLYEGFGVPIVEAQACGTPVITSTISSLPEI
AGNAALLVDPHDTAALTAALQKILTEPDVCQSLAEAGPRQAAKFTWEGTGLGVLGLYELLG
>Mature_381_residues
MHIAIDYNAAVRQGGGIGRFVREITQVAAQAAPQHRFSLWYAARGLDPKSAQMQALHELQRRLPNIKPRPIPINERLLTI
LWQRLRMPLPVETIVGAVDVVHGTDFVLPPTKAKTLLSIHDFAYIIHPETAPPELRRYLGGVVPRNVRRADHIHVNSRAT
KADMERLLGTAPSKSTIVYSGSGSDFYPRPAAEIAEMRQRLGLPERYLLNVGTVQPRKNVERLIEAFGQLPAELRSQPLV
IGGKRGWLAEPIYAAVQRHGLEQAVIFLDFVSDSDLPKLYSGATAMVYPSLYEGFGVPIVEAQACGTPVITSTISSLPEI
AGNAALLVDPHDTAALTAALQKILTEPDVCQSLAEAGPRQAAKFTWEGTGLGVLGLYELLG

Specific function: Involved In The Addition Of The First Glucose Residue To The Lipopolysaccharide Core. [C]

COG id: COG0438

COG function: function code M; Glycosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: NA

Molecular weight: Translated: 41641; Mature: 41641

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHIAIDYNAAVRQGGGIGRFVREITQVAAQAAPQHRFSLWYAARGLDPKSAQMQALHELQ
CEEEEECCHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHH
RRLPNIKPRPIPINERLLTILWQRLRMPLPVETIVGAVDVVHGTDFVLPPTKAKTLLSIH
HHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEECCCCCHHHHHHHH
DFAYIIHPETAPPELRRYLGGVVPRNVRRADHIHVNSRATKADMERLLGTAPSKSTIVYS
HEEEEECCCCCCHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCEEEEE
GSGSDFYPRPAAEIAEMRQRLGLPERYLLNVGTVQPRKNVERLIEAFGQLPAELRSQPLV
CCCCCCCCCCHHHHHHHHHHCCCCHHHHEECCCCCCHHHHHHHHHHHHCCCHHHCCCCEE
IGGKRGWLAEPIYAAVQRHGLEQAVIFLDFVSDSDLPKLYSGATAMVYPSLYEGFGVPIV
EECCCCCCHHHHHHHHHHCCCHHEEEEEEECCCCCCCHHHCCCHHEECHHHHCCCCCCEE
EAQACGTPVITSTISSLPEIAGNAALLVDPHDTAALTAALQKILTEPDVCQSLAEAGPRQ
EHHHCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHH
AAKFTWEGTGLGVLGLYELLG
HHEEEECCCCCHHHHHHHHHC
>Mature Secondary Structure
MHIAIDYNAAVRQGGGIGRFVREITQVAAQAAPQHRFSLWYAARGLDPKSAQMQALHELQ
CEEEEECCHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHH
RRLPNIKPRPIPINERLLTILWQRLRMPLPVETIVGAVDVVHGTDFVLPPTKAKTLLSIH
HHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEECCCCCHHHHHHHH
DFAYIIHPETAPPELRRYLGGVVPRNVRRADHIHVNSRATKADMERLLGTAPSKSTIVYS
HEEEEECCCCCCHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCEEEEE
GSGSDFYPRPAAEIAEMRQRLGLPERYLLNVGTVQPRKNVERLIEAFGQLPAELRSQPLV
CCCCCCCCCCHHHHHHHHHHCCCCHHHHEECCCCCCHHHHHHHHHHHHCCCHHHCCCCEE
IGGKRGWLAEPIYAAVQRHGLEQAVIFLDFVSDSDLPKLYSGATAMVYPSLYEGFGVPIV
EECCCCCCHHHHHHHHHHCCCHHEEEEEEECCCCCCCHHHCCCHHEECHHHHCCCCCCEE
EAQACGTPVITSTISSLPEIAGNAALLVDPHDTAALTAALQKILTEPDVCQSLAEAGPRQ
EHHHCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHH
AAKFTWEGTGLGVLGLYELLG
HHEEEECCCCCHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Hexosyltransferases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1710759; 11677609 [H]