Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
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Accession | NC_009972 |
Length | 6,346,587 |
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The map label for this gene is 159900696
Identifier: 159900696
GI number: 159900696
Start: 5335726
End: 5336406
Strand: Direct
Name: 159900696
Synonym: Haur_4183
Alternate gene names: NA
Gene position: 5335726-5336406 (Clockwise)
Preceding gene: 159900695
Following gene: 159900697
Centisome position: 84.07
GC content: 48.31
Gene sequence:
>681_bases ATGGCAGAAATACTGTATTTAGGGCATGCCAGCGTGCGGATTCGCGGTCGTGAAGGCATTGTAGTGCTTGATCCCTGCGA TCAATCGGTGGGCTTTGATATTGGCAAGCCAACTGCCCAAATTGTTACCATCAGCCATCACAAGGCTGATCACAATAATG TCGAAGTGGTCAAGCCATTGCGCGATACGCTATTTGTGGCCGATGGGCCAGGCGAATACGAAGTGAGCAATATCTTAATT CGTGGCATTCGTACAGCGCATACCGATGGCGAGGGCAAAAAACATGGCCATAACACAATTTATGTGATGTATATTGATGA TGTGGCTTTTTGCCATTTGGGCGATTTGGGCCATGGCCTGACTGCCAGCCAACTCGATGAAATTGGCTCAGTCGATGTGT TGTTTGTGCCAGTTGGCAATGGCAACCATGTGATCAAGCCTGATGGCATGGTCGAGATTATCAGCGAAATTGCCCCCAAA GTGGTTGTGCCATTGTATAACGACAATCAACAACAACGGCTCGAAGCGCTCGATTTGGAGCCATTGAGCGTGTTTGTGCA TCAGATGGGACTCAAGGAATACGAAACCCTTGATAAAGTCGTGTTTACACCCTCGACTTTGCCGCGCGAAGACGAAGAAA CCAAGATTGTGATTCTCAAGCCAAGTGCAGTTGCGGTATAG
Upstream 100 bases:
>100_bases GATTGTGCTTAACAGCCTATTCTAGCCATCGTTTTAACCAAAACACAAGTTTTGCCTTAGCGAAGCGTCATTAACGAACG GGCTATCTAGGAAGGAAATC
Downstream 100 bases:
>100_bases CTAAGTTTGGATTAATCGTTTGCCGAAGCCCTGTTTCAAGTACTGAAGCAGGGTTTTTGGTATAGTGAAGTACTAGAATA GCCTAACACTAAATCACCCT
Product: beta-lactamase fold-like Zn-dependent hydrolase
Products: NA
Alternate protein names: Zinc-Dependent Hydrolase; Zn-Dependent Hydrolase; Zn-Dependent Hydrolase Of Beta-Lactamase Fold; Zn-Dependent Hydrolase Of Beta-Lactamase Fold Protein; Metallo-Beta-Lactamase Superfamily Zn-Dependent Hydrolase; Zn-Dependent Hydrolases Of Beta-Lactamase Fold; Hydrolase
Number of amino acids: Translated: 226; Mature: 225
Protein sequence:
>226_residues MAEILYLGHASVRIRGREGIVVLDPCDQSVGFDIGKPTAQIVTISHHKADHNNVEVVKPLRDTLFVADGPGEYEVSNILI RGIRTAHTDGEGKKHGHNTIYVMYIDDVAFCHLGDLGHGLTASQLDEIGSVDVLFVPVGNGNHVIKPDGMVEIISEIAPK VVVPLYNDNQQQRLEALDLEPLSVFVHQMGLKEYETLDKVVFTPSTLPREDEETKIVILKPSAVAV
Sequences:
>Translated_226_residues MAEILYLGHASVRIRGREGIVVLDPCDQSVGFDIGKPTAQIVTISHHKADHNNVEVVKPLRDTLFVADGPGEYEVSNILI RGIRTAHTDGEGKKHGHNTIYVMYIDDVAFCHLGDLGHGLTASQLDEIGSVDVLFVPVGNGNHVIKPDGMVEIISEIAPK VVVPLYNDNQQQRLEALDLEPLSVFVHQMGLKEYETLDKVVFTPSTLPREDEETKIVILKPSAVAV >Mature_225_residues AEILYLGHASVRIRGREGIVVLDPCDQSVGFDIGKPTAQIVTISHHKADHNNVEVVKPLRDTLFVADGPGEYEVSNILIR GIRTAHTDGEGKKHGHNTIYVMYIDDVAFCHLGDLGHGLTASQLDEIGSVDVLFVPVGNGNHVIKPDGMVEIISEIAPKV VVPLYNDNQQQRLEALDLEPLSVFVHQMGLKEYETLDKVVFTPSTLPREDEETKIVILKPSAVAV
Specific function: Unknown
COG id: COG2220
COG function: function code R; Predicted Zn-dependent hydrolases of the beta-lactamase fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24773; Mature: 24641
Theoretical pI: Translated: 4.96; Mature: 4.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEILYLGHASVRIRGREGIVVLDPCDQSVGFDIGKPTAQIVTISHHKADHNNVEVVKPL CCEEEEECCEEEEEECCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEC RDTLFVADGPGEYEVSNILIRGIRTAHTDGEGKKHGHNTIYVMYIDDVAFCHLGDLGHGL CCEEEEECCCCCEEHHHHHEECEEEECCCCCCCCCCCCEEEEEEECCEEEEEECCCCCCC TASQLDEIGSVDVLFVPVGNGNHVIKPDGMVEIISEIAPKVVVPLYNDNQQQRLEALDLE CHHHHHHCCCEEEEEEEECCCCEEECCCCHHHHHHHCCCEEEEEEECCCHHHHHHHCCCC PLSVFVHQMGLKEYETLDKVVFTPSTLPREDEETKIVILKPSAVAV HHHHHHHHHCCHHHHHHHHEEECCCCCCCCCCCCEEEEECCCEECC >Mature Secondary Structure AEILYLGHASVRIRGREGIVVLDPCDQSVGFDIGKPTAQIVTISHHKADHNNVEVVKPL CEEEEECCEEEEEECCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEC RDTLFVADGPGEYEVSNILIRGIRTAHTDGEGKKHGHNTIYVMYIDDVAFCHLGDLGHGL CCEEEEECCCCCEEHHHHHEECEEEECCCCCCCCCCCCEEEEEEECCEEEEEECCCCCCC TASQLDEIGSVDVLFVPVGNGNHVIKPDGMVEIISEIAPKVVVPLYNDNQQQRLEALDLE CHHHHHHCCCEEEEEEEECCCCEEECCCCHHHHHHHCCCEEEEEEECCCHHHHHHHCCCC PLSVFVHQMGLKEYETLDKVVFTPSTLPREDEETKIVILKPSAVAV HHHHHHHHHCCHHHHHHHHEEECCCCCCCCCCCCEEEEECCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA