Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
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Accession | NC_009972 |
Length | 6,346,587 |
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The map label for this gene is 159899996
Identifier: 159899996
GI number: 159899996
Start: 4383578
End: 4384027
Strand: Direct
Name: 159899996
Synonym: Haur_3479
Alternate gene names: NA
Gene position: 4383578-4384027 (Clockwise)
Preceding gene: 159899991
Following gene: 159899997
Centisome position: 69.07
GC content: 47.56
Gene sequence:
>450_bases ATGCGTAAGGGATTTTTGCTGCTCGTTTTGACCTCCGTTTTAGCAGCATGCGGCACCGCAGAAAGCACACCAACCACCGT TCCTACGGCCACCGTTGCTGCAACTCCCACTACCGATAGCGCAGCCTACCCCACCCCTGATCTTGCGCAAAGCGAGATTA ACCCAATGATGATCGAAAGTGTTGCAGTTTCGGTTAAAGAATCAATGCCGCCCCAAGTATCGGTTGAAATTAACGGCATG CTCAACGATGGTTGTACTTCTTTCCACGAAGCCAAACAATCGATCGACGGCAACACCATCAAAATTGAAGTCACAACAAT TCGCCCTAAAGATGCCATGTGCAACCAACAGATCTCGCCATTTAGCACAATTATTCAAATCGAGGGCGAGCTAAAGCCAG GTGAATATACGATTTTAGTCAATGATGTCGCCGAAGCGCTTAAATTGTAA
Upstream 100 bases:
>100_bases TTCGTGGATCGACAGAGGCAGGAACAAAATCTGCTATGCTAACGTTGAATCTAGTAAGCACGTTGGCACAAGGCCAGCCT GATTAAAGGAGTTTTACCGA
Downstream 100 bases:
>100_bases ACTTGCAGATAACGTATTATGCAGCGGGGAGCTTTGGCTCTCCGCATTTGGTTTAATCTGAATGTTATTGAGGCTCGGAA AAATAGTAGATTCGACGCAG
Product: hypothetical protein
Products: NA
Alternate protein names: ORF11; ORFC [H]
Number of amino acids: Translated: 149; Mature: 149
Protein sequence:
>149_residues MRKGFLLLVLTSVLAACGTAESTPTTVPTATVAATPTTDSAAYPTPDLAQSEINPMMIESVAVSVKESMPPQVSVEINGM LNDGCTSFHEAKQSIDGNTIKIEVTTIRPKDAMCNQQISPFSTIIQIEGELKPGEYTILVNDVAEALKL
Sequences:
>Translated_149_residues MRKGFLLLVLTSVLAACGTAESTPTTVPTATVAATPTTDSAAYPTPDLAQSEINPMMIESVAVSVKESMPPQVSVEINGM LNDGCTSFHEAKQSIDGNTIKIEVTTIRPKDAMCNQQISPFSTIIQIEGELKPGEYTILVNDVAEALKL >Mature_149_residues MRKGFLLLVLTSVLAACGTAESTPTTVPTATVAATPTTDSAAYPTPDLAQSEINPMMIESVAVSVKESMPPQVSVEINGM LNDGCTSFHEAKQSIDGNTIKIEVTTIRPKDAMCNQQISPFSTIIQIEGELKPGEYTILVNDVAEALKL
Specific function: Could be a silencing control element for the regulation of the restriction system [H]
COG id: COG5513
COG function: function code S; Predicted secreted protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15812; Mature: 15812
Theoretical pI: Translated: 4.21; Mature: 4.21
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKGFLLLVLTSVLAACGTAESTPTTVPTATVAATPTTDSAAYPTPDLAQSEINPMMIES CCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHCCCHHHHHH VAVSVKESMPPQVSVEINGMLNDGCTSFHEAKQSIDGNTIKIEVTTIRPKDAMCNQQISP HHHHHHHCCCCEEEEEECCEECCCHHHHHHHHHHCCCCEEEEEEEEECCCHHHHCCCCCC FSTIIQIEGELKPGEYTILVNDVAEALKL CEEEEEEECCCCCCCEEEEHHHHHHHHCC >Mature Secondary Structure MRKGFLLLVLTSVLAACGTAESTPTTVPTATVAATPTTDSAAYPTPDLAQSEINPMMIES CCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHCCCHHHHHH VAVSVKESMPPQVSVEINGMLNDGCTSFHEAKQSIDGNTIKIEVTTIRPKDAMCNQQISP HHHHHHHCCCCEEEEEECCEECCCHHHHHHHHHHCCCCEEEEEEEEECCCHHHHCCCCCC FSTIIQIEGELKPGEYTILVNDVAEALKL CEEEEEEECCCCCCCEEEEHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1644308; 7607523 [H]