Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
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Accession | NC_009972 |
Length | 6,346,587 |
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The map label for this gene is 159899844
Identifier: 159899844
GI number: 159899844
Start: 4195808
End: 4197043
Strand: Direct
Name: 159899844
Synonym: Haur_3327
Alternate gene names: NA
Gene position: 4195808-4197043 (Clockwise)
Preceding gene: 159899843
Following gene: 159899845
Centisome position: 66.11
GC content: 48.14
Gene sequence:
>1236_bases ATGGCTAAAATGTGGTTTGTTGCTCGACGCGATTTGATGTACCATCTGCGCAAAAAAGATTTTTATTGGTCAACCTTGGG CGTGCCCTTGCTCATTGGCGCGATCTATCTGTTTGCCCAAGTGTTTGGCGGCGATCCGTCGGGCCAGGCCACGGCTAATC TTTTTTTACCCAGCACCGATCGGGCGCATAGCATCGGTGTCGTTGACCAATCGGCGGTGCTCAAACAACATTTCGAGGTT ATTTCACCAACAACCCTCTTGCAATTTGATGATCGCAACGTGGCTGAACAAGCGTTACGCCAAGCAACAATTGAAACCTT GTTCATTATTCCAGCAGATTATCATCAATCGGGAATAGTCACCCGTACCACCCGCACAGCAAGTGTGTTTGATCAAGCTG ATACCAACGCCTTGCGTAGCTTGTTAGCAGCCAATCAACTGCGCTCTCCGCACATTGATTTTGTGCCGCTGCTCTTCGAA CCAATTAGCCTGAGCAAAGCTGAAGCAATTGGCCAAAATGTCCGGGTTGCTGGCAACTTAAGCCAAAATTTTGCTGGCTC GATGGTGCCAATCGGCTTTGCAATGGCGATTTACATTTCGATTTTTATGGGCGCAAGTTTGTTGATGCAAGGAATTTTGG AGGAGAAAGAAAATCGCACGCTTGAAGTATTGCTCACCTCGATCTCGCCACGCCAATTATTAACTGGCAAAATGCTGGGT TTAGGCATCGTAGCCTTTATTCAATTGGGATTTTGGGCAGCACTGGCCTTAGGGGTGTTGCGCGGGCAAGCCATTCGTGA AGCGCTCAATCAAGTTCAAATCGATTCAGTCACTTGGATGTTGCTCGGGATCTTTTTTCTGCTCGGCTACCTATTTTACG CTAGCCTAACCGCTGGAATTGGGGCAATCAGCCCATCAATGCGCGAATTATCGCAATTAATTATTTTGGTGAGTGTGCCA GCGATGATTCCGCTGATGTTTATTACCTCGTTGCTGAGCAAACCCAACGGCGCTTTAGCCCTCATCCTCAGCATAATCCC CTTTACCGCTCCATCAACGATGATGCTTCGTTCAGTCATGACGGTTGTGCCACCTTGGCAAATAGGATTAAGTATTGGTT TGCTAGCGTTAGCTGTCGTAGCAACTCTCAGTGTTACTGCCCGCTTATTTCGCGCCACTATTTTGTTACGCGGCAGTAAA TTTTCGTTACGCGGGTTATGGCAGGCGTTGCGCTAG
Upstream 100 bases:
>100_bases ACCAGCAACGATCTTTGGAAAGTTTTAGGCGTTTGGCGCTTCCCTGAATCAACGAGCTTTGTAGTCCACCAAAATCATCT TGAGCGAACGGAGGCTGGGC
Downstream 100 bases:
>100_bases CCCACGGAGGCAGTATGGAATCAATTGTGCATATTGTTCTAGCCCTGTTGCGGCGTGAAAATCAGGTGTTATTGGTGCGT CAACAAGGCCAAAATGGCAG
Product: Na+ efflux ABC transporter permease-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 411; Mature: 410
Protein sequence:
>411_residues MAKMWFVARRDLMYHLRKKDFYWSTLGVPLLIGAIYLFAQVFGGDPSGQATANLFLPSTDRAHSIGVVDQSAVLKQHFEV ISPTTLLQFDDRNVAEQALRQATIETLFIIPADYHQSGIVTRTTRTASVFDQADTNALRSLLAANQLRSPHIDFVPLLFE PISLSKAEAIGQNVRVAGNLSQNFAGSMVPIGFAMAIYISIFMGASLLMQGILEEKENRTLEVLLTSISPRQLLTGKMLG LGIVAFIQLGFWAALALGVLRGQAIREALNQVQIDSVTWMLLGIFFLLGYLFYASLTAGIGAISPSMRELSQLIILVSVP AMIPLMFITSLLSKPNGALALILSIIPFTAPSTMMLRSVMTVVPPWQIGLSIGLLALAVVATLSVTARLFRATILLRGSK FSLRGLWQALR
Sequences:
>Translated_411_residues MAKMWFVARRDLMYHLRKKDFYWSTLGVPLLIGAIYLFAQVFGGDPSGQATANLFLPSTDRAHSIGVVDQSAVLKQHFEV ISPTTLLQFDDRNVAEQALRQATIETLFIIPADYHQSGIVTRTTRTASVFDQADTNALRSLLAANQLRSPHIDFVPLLFE PISLSKAEAIGQNVRVAGNLSQNFAGSMVPIGFAMAIYISIFMGASLLMQGILEEKENRTLEVLLTSISPRQLLTGKMLG LGIVAFIQLGFWAALALGVLRGQAIREALNQVQIDSVTWMLLGIFFLLGYLFYASLTAGIGAISPSMRELSQLIILVSVP AMIPLMFITSLLSKPNGALALILSIIPFTAPSTMMLRSVMTVVPPWQIGLSIGLLALAVVATLSVTARLFRATILLRGSK FSLRGLWQALR >Mature_410_residues AKMWFVARRDLMYHLRKKDFYWSTLGVPLLIGAIYLFAQVFGGDPSGQATANLFLPSTDRAHSIGVVDQSAVLKQHFEVI SPTTLLQFDDRNVAEQALRQATIETLFIIPADYHQSGIVTRTTRTASVFDQADTNALRSLLAANQLRSPHIDFVPLLFEP ISLSKAEAIGQNVRVAGNLSQNFAGSMVPIGFAMAIYISIFMGASLLMQGILEEKENRTLEVLLTSISPRQLLTGKMLGL GIVAFIQLGFWAALALGVLRGQAIREALNQVQIDSVTWMLLGIFFLLGYLFYASLTAGIGAISPSMRELSQLIILVSVPA MIPLMFITSLLSKPNGALALILSIIPFTAPSTMMLRSVMTVVPPWQIGLSIGLLALAVVATLSVTARLFRATILLRGSKF SLRGLWQALR
Specific function: Unknown
COG id: COG1668
COG function: function code CP; ABC-type Na+ efflux pump, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To B.subtilis yhaP [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44895; Mature: 44764
Theoretical pI: Translated: 10.35; Mature: 10.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKMWFVARRDLMYHLRKKDFYWSTLGVPLLIGAIYLFAQVFGGDPSGQATANLFLPSTD CCCHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC RAHSIGVVDQSAVLKQHFEVISPTTLLQFDDRNVAEQALRQATIETLFIIPADYHQSGIV CCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHEEEEEECCCCCCCCE TRTTRTASVFDQADTNALRSLLAANQLRSPHIDFVPLLFEPISLSKAEAIGQNVRVAGNL EECCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCHHHHHCCCCEEEECCC SQNFAGSMVPIGFAMAIYISIFMGASLLMQGILEEKENRTLEVLLTSISPRQLLTGKMLG CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHEECCCCHHHHHHHHHH LGIVAFIQLGFWAALALGVLRGQAIREALNQVQIDSVTWMLLGIFFLLGYLFYASLTAGI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GAISPSMRELSQLIILVSVPAMIPLMFITSLLSKPNGALALILSIIPFTAPSTMMLRSVM HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHH TVVPPWQIGLSIGLLALAVVATLSVTARLFRATILLRGSKFSLRGLWQALR HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC >Mature Secondary Structure AKMWFVARRDLMYHLRKKDFYWSTLGVPLLIGAIYLFAQVFGGDPSGQATANLFLPSTD CCHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC RAHSIGVVDQSAVLKQHFEVISPTTLLQFDDRNVAEQALRQATIETLFIIPADYHQSGIV CCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHEEEEEECCCCCCCCE TRTTRTASVFDQADTNALRSLLAANQLRSPHIDFVPLLFEPISLSKAEAIGQNVRVAGNL EECCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCHHHHHCCCCEEEECCC SQNFAGSMVPIGFAMAIYISIFMGASLLMQGILEEKENRTLEVLLTSISPRQLLTGKMLG CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHEECCCCHHHHHHHHHH LGIVAFIQLGFWAALALGVLRGQAIREALNQVQIDSVTWMLLGIFFLLGYLFYASLTAGI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GAISPSMRELSQLIILVSVPAMIPLMFITSLLSKPNGALALILSIIPFTAPSTMMLRSVM HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHH TVVPPWQIGLSIGLLALAVVATLSVTARLFRATILLRGSKFSLRGLWQALR HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]