Click here to switch to the map view.

The map label for this gene is 159899746

Identifier: 159899746

GI number: 159899746

Start: 4086020

End: 4088200

Strand: Direct

Name: 159899746

Synonym: Haur_3228

Alternate gene names: NA

Gene position: 4086020-4088200 (Clockwise)

Preceding gene: 159899744

Following gene: 159899747

Centisome position: 64.38

GC content: 49.89

Gene sequence:

>2181_bases
ATGCATCATCTTCCCCAGTATTCGACCCGCTTAATTGGCCGAAACCGTGTGGTTGCTGCCTTAGTTGCCCTCTTTCAAGA
GCAAGCGCATCGGCTTGTGAGCTTGATCGGCGCGAGTGGCACTGGCAAAACGCGGCTGGGGCTTGAAGCAACCGAAACTA
TCCGCGATAGTTTTACTGATGGTTGCTATTTTATCAATTTAGCGCCAGTTGATGATGCGGTATTTGTGCTGCCAACCATT
GCCCATACCTTGGGCGTGCATGAAACCGCCAATCAATCATTGCTCGATAGCGTGGTGAATTTTCTGCGTGGCAAGCGGGT
GTTGTTGATTCTCGATAATTTCGAGCAGGTCAAACGGGCTGCTGATGAGCTTAAATTGTTGATCGAACGCACTGATCAGG
CTCAATTTATGGTGACAAGCCAAGTTGCGTTGGGCTTGGCTGCTGAATATGAGTTTAGTGTGCCACCGCTCGAAGTGCCT
GAGCAGTCCAATCTGCCATCCAACCAATTATTAGAATATTCAGCAATTGCCTTGTTTGTTGATCGCATGCAGGCGATTCA
GCCGCGCTTTGTGTTGACTGATACCCAAGCCAAGGCTGTGGTCGAAATTTGTCGGTTGCTGCATGGCTTGCCTTTGGCGA
TTGAATTAATTGCCGCCCATAGTTCGGCACTCTCGCCGACCGATTTGCTGTTGCTCGTGCGCAATTATTTGGCGCTTGGC
CGAGGCGCGGCAATTGCCAAACCCGCCCGTCACCATGTGCTCTACCCAGTGCTCGATTGGTGCTTTAGCCGTTTGTCAGC
GCCGCAACAAACTTTATTTAGCCGCTTGGGTGCGTTTATTGGCGGTTGCTCTAACGATGCAGTGATGGCGCTCTATCAAA
CAGTTGGCGAGTTCGCGACTGCTGTTGATCCAGGCATTACCAGCTTGAAGCAAAAACATTTGCTCTTGGAAGAAACCATG
CCTGGCCAGCAGTCACGCTACATTATGCTCGATGCCGTGCGCGAATATGCTCACCAGCGTTTGCGCAAACGCAAAGAAGC
CCATCAAATTGATCTGTATCATGCCCAGTATTACCGTGATTTGAGCATAACCGCCAAAGCTGAGTTGGGCGGCCCCAAGC
ATGAATACTGGACAAATCGGCTGCTCAGCGAAATTCATAATATTCGTTCAGCGATTCAATGGGCTTTGAGCCATAACGAA
GCCAATTTGGCCTTGCAATTAAGCAGCAATTTGGTGATGTTTTGGGTACGCCAAGGCTATCTCACCGAAGGCCGCCGCTG
GATCACCGCTGCATTAGAACATCAAGCTAAGGCAGACCCCATAATTGTGCGGCCAGCGTTGGGGGCAGCCGCAGGCATGG
CTTGGTCGCAAAGCTGTTATCAAGAAGCCAAACAATACCTTGAAGCAGCCTTAACAATTGAATCAACCAACCAAGCCGAA
ACTGCACGGCTACTCAATACGATGGGCTTAGTGCTCTATGAACAAGGCTTGCATCAACCAGCTAGCGATTATTTTGAGCA
GGCCTTGGCGATCTATCGCACTCTCGACGACCAGACAATGCTGGGAATTACACTCAATAATTTGGGCTTGGTCGAAATTG
ATCGTGGCAATTTGGCGGCAGCACGCTACATTTATGCTGAAGTTTTGGCCTTATTCCGCCCAGCCAATAATCCCTTTAAT
CTCACCATGCCGCTAAGCAACTTGGCCTTGATTGAAATTCTCGAATATCGTTATGCTGAGGCTGAACCCTTGCTGGAAGA
GGGTTTAGCGCTGTGTCGTGATAATCGCGATTACAATGGCTTGGGCTATTTTCTGACCAATTTAGCTGCTTGTTTGGGTG
GCCAAGGTCGTTTTGAGCGAGCGCGGGATTGCTTGGTAGAAGCGTTGATTCTACGCAAAAATGCCCAAGCTAAAATTGGC
ATGTTGGTTGGAGCCAAAACTGCCAGCGAAATCTTGCTCAAGGCCGGCTTGGCTGAGGCAGCGGCGCTGGCATGGGGCTA
CGCCAGCGCATTGTTCAGCGAACTGCAATTAACCCCGCTTTGGTACGATGAGCGTCAACAAACCATGCTCGAAACTGAAT
TAAGCACCATGCTTGGTAACGAACACTTGGCCAGCCTCAAACAAACCGGCACAAGCAAAACGATCGACGACATTATTAGC
CTGATACAAACCGCCATATAA

Upstream 100 bases:

>100_bases
TAATTAAACACCCGAGCTTGCCATCAATCATCAGCCCAACGACTCATCAACGCTGACTACAGCCTGCCCGAGACCCCACA
TTAGCATACTGGAGTTCGCC

Downstream 100 bases:

>100_bases
CGAGCTGAGAGGTTTAGATAGGTATGTTACCTTCGGATTTTCTTTCGGTGCTATCATACCAAACGGTTTTGTTTCAGAGG
ATTTGTAGTGAATTCGACAA

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 726; Mature: 726

Protein sequence:

>726_residues
MHHLPQYSTRLIGRNRVVAALVALFQEQAHRLVSLIGASGTGKTRLGLEATETIRDSFTDGCYFINLAPVDDAVFVLPTI
AHTLGVHETANQSLLDSVVNFLRGKRVLLILDNFEQVKRAADELKLLIERTDQAQFMVTSQVALGLAAEYEFSVPPLEVP
EQSNLPSNQLLEYSAIALFVDRMQAIQPRFVLTDTQAKAVVEICRLLHGLPLAIELIAAHSSALSPTDLLLLVRNYLALG
RGAAIAKPARHHVLYPVLDWCFSRLSAPQQTLFSRLGAFIGGCSNDAVMALYQTVGEFATAVDPGITSLKQKHLLLEETM
PGQQSRYIMLDAVREYAHQRLRKRKEAHQIDLYHAQYYRDLSITAKAELGGPKHEYWTNRLLSEIHNIRSAIQWALSHNE
ANLALQLSSNLVMFWVRQGYLTEGRRWITAALEHQAKADPIIVRPALGAAAGMAWSQSCYQEAKQYLEAALTIESTNQAE
TARLLNTMGLVLYEQGLHQPASDYFEQALAIYRTLDDQTMLGITLNNLGLVEIDRGNLAAARYIYAEVLALFRPANNPFN
LTMPLSNLALIEILEYRYAEAEPLLEEGLALCRDNRDYNGLGYFLTNLAACLGGQGRFERARDCLVEALILRKNAQAKIG
MLVGAKTASEILLKAGLAEAAALAWGYASALFSELQLTPLWYDERQQTMLETELSTMLGNEHLASLKQTGTSKTIDDIIS
LIQTAI

Sequences:

>Translated_726_residues
MHHLPQYSTRLIGRNRVVAALVALFQEQAHRLVSLIGASGTGKTRLGLEATETIRDSFTDGCYFINLAPVDDAVFVLPTI
AHTLGVHETANQSLLDSVVNFLRGKRVLLILDNFEQVKRAADELKLLIERTDQAQFMVTSQVALGLAAEYEFSVPPLEVP
EQSNLPSNQLLEYSAIALFVDRMQAIQPRFVLTDTQAKAVVEICRLLHGLPLAIELIAAHSSALSPTDLLLLVRNYLALG
RGAAIAKPARHHVLYPVLDWCFSRLSAPQQTLFSRLGAFIGGCSNDAVMALYQTVGEFATAVDPGITSLKQKHLLLEETM
PGQQSRYIMLDAVREYAHQRLRKRKEAHQIDLYHAQYYRDLSITAKAELGGPKHEYWTNRLLSEIHNIRSAIQWALSHNE
ANLALQLSSNLVMFWVRQGYLTEGRRWITAALEHQAKADPIIVRPALGAAAGMAWSQSCYQEAKQYLEAALTIESTNQAE
TARLLNTMGLVLYEQGLHQPASDYFEQALAIYRTLDDQTMLGITLNNLGLVEIDRGNLAAARYIYAEVLALFRPANNPFN
LTMPLSNLALIEILEYRYAEAEPLLEEGLALCRDNRDYNGLGYFLTNLAACLGGQGRFERARDCLVEALILRKNAQAKIG
MLVGAKTASEILLKAGLAEAAALAWGYASALFSELQLTPLWYDERQQTMLETELSTMLGNEHLASLKQTGTSKTIDDIIS
LIQTAI
>Mature_726_residues
MHHLPQYSTRLIGRNRVVAALVALFQEQAHRLVSLIGASGTGKTRLGLEATETIRDSFTDGCYFINLAPVDDAVFVLPTI
AHTLGVHETANQSLLDSVVNFLRGKRVLLILDNFEQVKRAADELKLLIERTDQAQFMVTSQVALGLAAEYEFSVPPLEVP
EQSNLPSNQLLEYSAIALFVDRMQAIQPRFVLTDTQAKAVVEICRLLHGLPLAIELIAAHSSALSPTDLLLLVRNYLALG
RGAAIAKPARHHVLYPVLDWCFSRLSAPQQTLFSRLGAFIGGCSNDAVMALYQTVGEFATAVDPGITSLKQKHLLLEETM
PGQQSRYIMLDAVREYAHQRLRKRKEAHQIDLYHAQYYRDLSITAKAELGGPKHEYWTNRLLSEIHNIRSAIQWALSHNE
ANLALQLSSNLVMFWVRQGYLTEGRRWITAALEHQAKADPIIVRPALGAAAGMAWSQSCYQEAKQYLEAALTIESTNQAE
TARLLNTMGLVLYEQGLHQPASDYFEQALAIYRTLDDQTMLGITLNNLGLVEIDRGNLAAARYIYAEVLALFRPANNPFN
LTMPLSNLALIEILEYRYAEAEPLLEEGLALCRDNRDYNGLGYFLTNLAACLGGQGRFERARDCLVEALILRKNAQAKIG
MLVGAKTASEILLKAGLAEAAALAWGYASALFSELQLTPLWYDERQQTMLETELSTMLGNEHLASLKQTGTSKTIDDIIS
LIQTAI

Specific function: Unknown

COG id: COG3903

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000767
- InterPro:   IPR016032
- InterPro:   IPR011990
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 80570; Mature: 80570

Theoretical pI: Translated: 6.21; Mature: 6.21

Prosite motif: PS50293 TPR_REGION ; PS00239 RECEPTOR_TYR_KIN_II

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHHLPQYSTRLIGRNRVVAALVALFQEQAHRLVSLIGASGTGKTRLGLEATETIRDSFTD
CCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC
GCYFINLAPVDDAVFVLPTIAHTLGVHETANQSLLDSVVNFLRGKRVLLILDNFEQVKRA
CEEEEEEECCCCHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHCCCEEEEEECCHHHHHHH
ADELKLLIERTDQAQFMVTSQVALGLAAEYEFSVPPLEVPEQSNLPSNQLLEYSAIALFV
HHHHHHHHHHCCCHHEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
DRMQAIQPRFVLTDTQAKAVVEICRLLHGLPLAIELIAAHSSALSPTDLLLLVRNYLALG
HHHHHCCCCEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
RGAAIAKPARHHVLYPVLDWCFSRLSAPQQTLFSRLGAFIGGCSNDAVMALYQTVGEFAT
CCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
AVDPGITSLKQKHLLLEETMPGQQSRYIMLDAVREYAHQRLRKRKEAHQIDLYHAQYYRD
HCCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHC
LSITAKAELGGPKHEYWTNRLLSEIHNIRSAIQWALSHNEANLALQLSSNLVMFWVRQGY
CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEEHHCH
LTEGRRWITAALEHQAKADPIIVRPALGAAAGMAWSQSCYQEAKQYLEAALTIESTNQAE
HHCCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
TARLLNTMGLVLYEQGLHQPASDYFEQALAIYRTLDDQTMLGITLNNLGLVEIDRGNLAA
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEECCCCHHH
ARYIYAEVLALFRPANNPFNLTMPLSNLALIEILEYRYAEAEPLLEEGLALCRDNRDYNG
HHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCH
LGYFLTNLAACLGGQGRFERARDCLVEALILRKNAQAKIGMLVGAKTASEILLKAGLAEA
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHH
AALAWGYASALFSELQLTPLWYDERQQTMLETELSTMLGNEHLASLKQTGTSKTIDDIIS
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHH
LIQTAI
HHHHCC
>Mature Secondary Structure
MHHLPQYSTRLIGRNRVVAALVALFQEQAHRLVSLIGASGTGKTRLGLEATETIRDSFTD
CCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC
GCYFINLAPVDDAVFVLPTIAHTLGVHETANQSLLDSVVNFLRGKRVLLILDNFEQVKRA
CEEEEEEECCCCHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHCCCEEEEEECCHHHHHHH
ADELKLLIERTDQAQFMVTSQVALGLAAEYEFSVPPLEVPEQSNLPSNQLLEYSAIALFV
HHHHHHHHHHCCCHHEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
DRMQAIQPRFVLTDTQAKAVVEICRLLHGLPLAIELIAAHSSALSPTDLLLLVRNYLALG
HHHHHCCCCEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
RGAAIAKPARHHVLYPVLDWCFSRLSAPQQTLFSRLGAFIGGCSNDAVMALYQTVGEFAT
CCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
AVDPGITSLKQKHLLLEETMPGQQSRYIMLDAVREYAHQRLRKRKEAHQIDLYHAQYYRD
HCCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHC
LSITAKAELGGPKHEYWTNRLLSEIHNIRSAIQWALSHNEANLALQLSSNLVMFWVRQGY
CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEEHHCH
LTEGRRWITAALEHQAKADPIIVRPALGAAAGMAWSQSCYQEAKQYLEAALTIESTNQAE
HHCCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
TARLLNTMGLVLYEQGLHQPASDYFEQALAIYRTLDDQTMLGITLNNLGLVEIDRGNLAA
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEECCCCHHH
ARYIYAEVLALFRPANNPFNLTMPLSNLALIEILEYRYAEAEPLLEEGLALCRDNRDYNG
HHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCH
LGYFLTNLAACLGGQGRFERARDCLVEALILRKNAQAKIGMLVGAKTASEILLKAGLAEA
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHH
AALAWGYASALFSELQLTPLWYDERQQTMLETELSTMLGNEHLASLKQTGTSKTIDDIIS
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHH
LIQTAI
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]