BacMap

Definition	Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome.
Accession	NC_009972
Length	6,346,587

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The map label for this gene is yfiL [H]

Identifier: 159899396

GI number: 159899396

Start: 3649432

End: 3650421

Strand: Direct

Name: yfiL [H]

Synonym: Haur_2877

Alternate gene names: 159899396

Gene position: 3649432-3650421 (Clockwise)

Preceding gene: 159899395

Following gene: 159899397

Centisome position: 57.5

GC content: 50.1

Gene sequence:

>990_bases
ATGCAGCCTGAATATGCCATTCGAACCGTCAATTTGCAACGAACCTATAAAACCAAAGAACGGATCTTGAAGGCGCTTGA
TGGGGTTGATTTAGCGGTACGGCCAGGCGAATTATTCGGTTTTCTCGGGCCAAACGGCGCTGGAAAAACTACCACGATCA
AAATTTTAACGACATTGTTATTGCCAACTGGCGGCACAGCTGAAGTTTGGGGCTTCGATGTGCTGCATGAAGCCGATGCA
GTCCGCCGCCATATCAATATGGTTTCGGGCGGTGAATCGTCGGGCTATGGCTTGTTGACTGTGCGCGAAAATTTGTGGAT
GTTTACCCAGTTTCATGGCATGGATAGCAAACTAGCCAATAAACGCATCGACGAATTGCTCGAAGTAATGGGCTTGGCCG
ATCGGGCTAAAACTCGCGTGAGTTTTCTTTCGACAGGCTTGCGCCAAAAAATGAACTATATTCGTGGTTTATTGACCGAT
CCTGATGTGTTGTTTCTTGATGAGCCAACGCTTGGGTTGGATGTTGAGGCGGCTCGCACGCTGCGCACCTACACCCGCCA
CTGGCTCGATACTAATCCAGGCAAAACCGTGGTGCTCACCACCCACTATATGCAAGAAGCCGATGAATTATGCGATCGGG
TAGCAATTATCAGCGGCGGCACGATTTTGGCCTGCGATACACCAACCAGCCTCAAACATTCGCTGCAAGAAGATGTGGTG
TTTCGCTTATTCACCACACCCGTAAATCCGGCCTTTTTGCAAGCAGTTGAGCAAATTGCGGGTGTGCAAAGCATCAGCCA
ACGCAGCGGTGATCAGCGCGATGAATTAAGCCTGATTCTCCGTGATGATGCGATTTTGCCCCACGTGTTGAGCCAACTGG
CCGCGCATAATGCCGGTTTGTTGTCGCTCGAAAAACGCCAACCAACCCTTGAAGACGTGTTTGTCAACCTCGTTGGCCAC
TCATTATCAGAAAGTGAGGCCAGTGCATGA

Upstream 100 bases:

>100_bases
GCGCACAGTTGAGCTATGCTAATCACCAGATGATCAATTGTTGATAGCGAATACCAACTACACTGCCGCAAGGCGGTGTT
TACTTTCTGTGCGAGGAACT

Downstream 100 bases:

>100_bases
GCGTGATTCTCGATAAACATACAGCAGTTGAACGTCAACCCAACCCACGCCGTGGTAAAGGGCCAAGTGCTTTTACAATC
TTTTGGCGCTCAGTCATTGG

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MQPEYAIRTVNLQRTYKTKERILKALDGVDLAVRPGELFGFLGPNGAGKTTTIKILTTLLLPTGGTAEVWGFDVLHEADA
VRRHINMVSGGESSGYGLLTVRENLWMFTQFHGMDSKLANKRIDELLEVMGLADRAKTRVSFLSTGLRQKMNYIRGLLTD
PDVLFLDEPTLGLDVEAARTLRTYTRHWLDTNPGKTVVLTTHYMQEADELCDRVAIISGGTILACDTPTSLKHSLQEDVV
FRLFTTPVNPAFLQAVEQIAGVQSISQRSGDQRDELSLILRDDAILPHVLSQLAAHNAGLLSLEKRQPTLEDVFVNLVGH
SLSESEASA

Sequences:

>Translated_329_residues
MQPEYAIRTVNLQRTYKTKERILKALDGVDLAVRPGELFGFLGPNGAGKTTTIKILTTLLLPTGGTAEVWGFDVLHEADA
VRRHINMVSGGESSGYGLLTVRENLWMFTQFHGMDSKLANKRIDELLEVMGLADRAKTRVSFLSTGLRQKMNYIRGLLTD
PDVLFLDEPTLGLDVEAARTLRTYTRHWLDTNPGKTVVLTTHYMQEADELCDRVAIISGGTILACDTPTSLKHSLQEDVV
FRLFTTPVNPAFLQAVEQIAGVQSISQRSGDQRDELSLILRDDAILPHVLSQLAAHNAGLLSLEKRQPTLEDVFVNLVGH
SLSESEASA
>Mature_329_residues
MQPEYAIRTVNLQRTYKTKERILKALDGVDLAVRPGELFGFLGPNGAGKTTTIKILTTLLLPTGGTAEVWGFDVLHEADA
VRRHINMVSGGESSGYGLLTVRENLWMFTQFHGMDSKLANKRIDELLEVMGLADRAKTRVSFLSTGLRQKMNYIRGLLTD
PDVLFLDEPTLGLDVEAARTLRTYTRHWLDTNPGKTVVLTTHYMQEADELCDRVAIISGGTILACDTPTSLKHSLQEDVV
FRLFTTPVNPAFLQAVEQIAGVQSISQRSGDQRDELSLILRDDAILPHVLSQLAAHNAGLLSLEKRQPTLEDVFVNLVGH
SLSESEASA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI45446740, Length=349, Percent_Identity=30.6590257879656, Blast_Score=146, Evalue=3e-35,
Organism=Homo sapiens, GI47078218, Length=349, Percent_Identity=30.6590257879656, Blast_Score=145, Evalue=3e-35,
Organism=Homo sapiens, GI21536376, Length=229, Percent_Identity=34.4978165938865, Blast_Score=130, Evalue=1e-30,
Organism=Homo sapiens, GI150417984, Length=235, Percent_Identity=32.3404255319149, Blast_Score=130, Evalue=1e-30,
Organism=Homo sapiens, GI116734710, Length=319, Percent_Identity=29.153605015674, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI105990541, Length=265, Percent_Identity=32.4528301886792, Blast_Score=122, Evalue=3e-28,
Organism=Homo sapiens, GI153792144, Length=242, Percent_Identity=30.1652892561983, Blast_Score=116, Evalue=3e-26,
Organism=Homo sapiens, GI27436953, Length=309, Percent_Identity=29.7734627831715, Blast_Score=113, Evalue=2e-25,
Organism=Homo sapiens, GI6005701, Length=227, Percent_Identity=33.0396475770925, Blast_Score=112, Evalue=7e-25,
Organism=Homo sapiens, GI27477115, Length=254, Percent_Identity=31.8897637795276, Blast_Score=111, Evalue=7e-25,
Organism=Homo sapiens, GI27262624, Length=327, Percent_Identity=26.605504587156, Blast_Score=105, Evalue=5e-23,
Organism=Homo sapiens, GI27262626, Length=327, Percent_Identity=26.605504587156, Blast_Score=105, Evalue=5e-23,
Organism=Homo sapiens, GI27881501, Length=214, Percent_Identity=30.8411214953271, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI30795238, Length=214, Percent_Identity=30.8411214953271, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI31657092, Length=235, Percent_Identity=30.2127659574468, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI73747915, Length=190, Percent_Identity=28.4210526315789, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI62526033, Length=226, Percent_Identity=28.3185840707965, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI73747917, Length=171, Percent_Identity=30.9941520467836, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI11967969, Length=225, Percent_Identity=29.7777777777778, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI87081782, Length=218, Percent_Identity=39.4495412844037, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1786319, Length=312, Percent_Identity=30.7692307692308, Blast_Score=142, Evalue=4e-35,
Organism=Escherichia coli, GI48994943, Length=207, Percent_Identity=35.2657004830918, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI1786398, Length=256, Percent_Identity=30.078125, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1787712, Length=230, Percent_Identity=30, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1789032, Length=285, Percent_Identity=27.3684210526316, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1789593, Length=237, Percent_Identity=29.535864978903, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1790467, Length=239, Percent_Identity=27.1966527196653, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788761, Length=235, Percent_Identity=29.7872340425532, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI87081791, Length=263, Percent_Identity=27.3764258555133, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788225, Length=227, Percent_Identity=29.5154185022026, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787105, Length=221, Percent_Identity=30.7692307692308, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI48995001, Length=236, Percent_Identity=26.6949152542373, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789864, Length=239, Percent_Identity=27.6150627615063, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1790544, Length=240, Percent_Identity=29.1666666666667, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1787089, Length=208, Percent_Identity=30.7692307692308, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI87081709, Length=216, Percent_Identity=29.1666666666667, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787792, Length=239, Percent_Identity=28.4518828451883, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789962, Length=266, Percent_Identity=26.6917293233083, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787029, Length=213, Percent_Identity=30.5164319248826, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1790739, Length=229, Percent_Identity=28.82096069869, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787370, Length=219, Percent_Identity=27.8538812785388, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1790190, Length=240, Percent_Identity=27.5, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1788450, Length=232, Percent_Identity=26.7241379310345, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789672, Length=242, Percent_Identity=28.099173553719, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87082267, Length=219, Percent_Identity=28.310502283105, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786703, Length=231, Percent_Identity=29.004329004329, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1790525, Length=206, Percent_Identity=28.6407766990291, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788472, Length=228, Percent_Identity=25.8771929824561, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1786563, Length=200, Percent_Identity=28.5, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1787758, Length=215, Percent_Identity=29.7674418604651, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI48994997, Length=220, Percent_Identity=27.2727272727273, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789873, Length=207, Percent_Identity=28.9855072463768, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787759, Length=218, Percent_Identity=27.5229357798165, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1788506, Length=256, Percent_Identity=25.78125, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081834, Length=213, Percent_Identity=28.169014084507, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1789991, Length=224, Percent_Identity=27.6785714285714, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87082268, Length=217, Percent_Identity=29.0322580645161, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI48994883, Length=265, Percent_Identity=25.6603773584906, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1786345, Length=238, Percent_Identity=26.0504201680672, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=220, Percent_Identity=34.5454545454545, Blast_Score=114, Evalue=6e-26,
Organism=Caenorhabditis elegans, GI17565586, Length=341, Percent_Identity=28.4457478005865, Blast_Score=112, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI71983510, Length=225, Percent_Identity=32.8888888888889, Blast_Score=108, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI71983516, Length=225, Percent_Identity=32.8888888888889, Blast_Score=108, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI71983523, Length=225, Percent_Identity=32.8888888888889, Blast_Score=108, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI17510237, Length=218, Percent_Identity=30.2752293577982, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17539902, Length=276, Percent_Identity=30.4347826086957, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17538654, Length=228, Percent_Identity=29.3859649122807, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17552010, Length=227, Percent_Identity=28.1938325991189, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17558664, Length=168, Percent_Identity=31.547619047619, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193202349, Length=236, Percent_Identity=27.1186440677966, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI221512771, Length=330, Percent_Identity=28.7878787878788, Blast_Score=118, Evalue=6e-27,
Organism=Drosophila melanogaster, GI24643674, Length=208, Percent_Identity=31.7307692307692, Blast_Score=105, Evalue=6e-23,
Organism=Drosophila melanogaster, GI116007328, Length=228, Percent_Identity=29.8245614035088, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI28574150, Length=228, Percent_Identity=29.8245614035088, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24666092, Length=219, Percent_Identity=27.3972602739726, Blast_Score=95, Evalue=5e-20,
Organism=Drosophila melanogaster, GI24650853, Length=218, Percent_Identity=27.9816513761468, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24648314, Length=201, Percent_Identity=27.8606965174129, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24650855, Length=219, Percent_Identity=28.7671232876712, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24582014, Length=278, Percent_Identity=26.2589928057554, Blast_Score=86, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24582012, Length=278, Percent_Identity=26.2589928057554, Blast_Score=86, Evalue=4e-17,
Organism=Drosophila melanogaster, GI281362751, Length=218, Percent_Identity=27.9816513761468, Blast_Score=86, Evalue=4e-17,
Organism=Drosophila melanogaster, GI28573571, Length=235, Percent_Identity=25.1063829787234, Blast_Score=81, Evalue=9e-16,
Organism=Drosophila melanogaster, GI28573573, Length=235, Percent_Identity=25.1063829787234, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI85725262, Length=244, Percent_Identity=29.0983606557377, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI17136592, Length=288, Percent_Identity=28.8194444444444, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI45552805, Length=176, Percent_Identity=32.3863636363636, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28571209, Length=216, Percent_Identity=25.462962962963, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI17647219, Length=176, Percent_Identity=32.3863636363636, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI161076684, Length=196, Percent_Identity=30.1020408163265, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24581617, Length=196, Percent_Identity=30.1020408163265, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24581615, Length=196, Percent_Identity=30.1020408163265, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI161076682, Length=196, Percent_Identity=30.1020408163265, Blast_Score=69, Evalue=6e-12,
Organism=Drosophila melanogaster, GI17647959, Length=274, Percent_Identity=29.1970802919708, Blast_Score=69, Evalue=6e-12,
Organism=Drosophila melanogaster, GI221500365, Length=239, Percent_Identity=25.5230125523013, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI116007184, Length=239, Percent_Identity=25.5230125523013, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24581191, Length=215, Percent_Identity=29.3023255813954, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24581189, Length=215, Percent_Identity=29.3023255813954, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24581193, Length=215, Percent_Identity=29.3023255813954, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24581195, Length=215, Percent_Identity=29.3023255813954, Blast_Score=68, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 36324; Mature: 36324

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPEYAIRTVNLQRTYKTKERILKALDGVDLAVRPGELFGFLGPNGAGKTTTIKILTTLL
CCCCEEEEEEEHHHHHHHHHHHHHHHCCCCEEEECCHHEEEECCCCCCCHHHHHHHHHHH
LPTGGTAEVWGFDVLHEADAVRRHINMVSGGESSGYGLLTVRENLWMFTQFHGMDSKLAN
CCCCCCCHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCEEEEEEECCCCHHHHH
KRIDELLEVMGLADRAKTRVSFLSTGLRQKMNYIRGLLTDPDVLFLDEPTLGLDVEAART
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHH
LRTYTRHWLDTNPGKTVVLTTHYMQEADELCDRVAIISGGTILACDTPTSLKHSLQEDVV
HHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHEEEEECCEEEEECCCHHHHHHHHHHHH
FRLFTTPVNPAFLQAVEQIAGVQSISQRSGDQRDELSLILRDDAILPHVLSQLAAHNAGL
HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEECCCHHHHHHHHHHHCCCCC
LSLEKRQPTLEDVFVNLVGHSLSESEASA
EEECCCCCCHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MQPEYAIRTVNLQRTYKTKERILKALDGVDLAVRPGELFGFLGPNGAGKTTTIKILTTLL
CCCCEEEEEEEHHHHHHHHHHHHHHHCCCCEEEECCHHEEEECCCCCCCHHHHHHHHHHH
LPTGGTAEVWGFDVLHEADAVRRHINMVSGGESSGYGLLTVRENLWMFTQFHGMDSKLAN
CCCCCCCHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCEEEEEEECCCCHHHHH
KRIDELLEVMGLADRAKTRVSFLSTGLRQKMNYIRGLLTDPDVLFLDEPTLGLDVEAART
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHH
LRTYTRHWLDTNPGKTVVLTTHYMQEADELCDRVAIISGGTILACDTPTSLKHSLQEDVV
HHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHEEEEECCEEEEECCCHHHHHHHHHHHH
FRLFTTPVNPAFLQAVEQIAGVQSISQRSGDQRDELSLILRDDAILPHVLSQLAAHNAGL
HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEECCCHHHHHHHHHHHCCCCC
LSLEKRQPTLEDVFVNLVGHSLSESEASA
EEECCCCCCHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8973323; 9384377 [H]