| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
Click here to switch to the map view.
The map label for this gene is hutH [H]
Identifier: 159898407
GI number: 159898407
Start: 2270240
End: 2271898
Strand: Reverse
Name: hutH [H]
Synonym: Haur_1883
Alternate gene names: 159898407
Gene position: 2271898-2270240 (Counterclockwise)
Preceding gene: 159898408
Following gene: 159898395
Centisome position: 35.8
GC content: 48.88
Gene sequence:
>1659_bases GTGAGCACCACCCTTATTTTAACTGGCGAAGGCTTGGGCATTGATGACGTTGTACGGGTTGCGCGGCATCAAGATCGGGT TGAACTAACCACCGATCCAGCGATTTTAGCCCAGATCGAAGCGTCGTGTGCTTATATCAATCAGGCAGTGAAGGAGCATC AGCCGGTTTATGGGGTAACAACTGGCTTTGGGGGCATGGCCAACGTAATTATCTCGCCTGAAGAAGCTGCCGAGTTGCAA AATAATGCCATTTGGTATCATAAAACGGGGGCCGGCAAGCTCTTGCCATTTACCGATGTTCGCGCTGCGATGCTGTTGCG AGCTAATTCGCATATGCGAGGTGCATCGGGTATTCGACTGGAAATCATTCAACGCATGGTGACGTTTCTGAATGCCAATG TTACACCACATGTGCGTGAGTTTGGCTCAATTGGGGCAAGCGGTGATCTTGTGCCATTAATTAGCATCACTGGAGCTTTG TTGGGCACAGATCAAGCTTTTATGGTTGATTTTAACGGCGAGACCCTTGATTGTATCAGTGCACTTGAACGTTTAGGGCT GCCACGCCTCCGTTTGCAACCCAAAGAAGGCTTGGCGATGATGAATGGTACTTCGGTGATGACCGGAATCGCCGCCAATT GCGTTCACGATGCGCGAATTCTCTTGGCCTTAGCCTTGGAAGCCCACGCCTTAATGATTCAAGGCTTACAAGGCACGAAT CAATCGTTTCACCCGTTTATTCATCGCCACAAACCGCATACTGGCCAAGTTTGGGCCGCTGACCATATGCTCGAATTGCT ACAAGGCTCGCAGCTTTCGCGCAATGAACTTGATGGTAGCCACGATTATCGCGATGGTGATTTGATTCAAGATCGCTATT CGTTACGCTGTTTACCGCAATTTTTGGGGCCAATCATCGATGGAATGGCCTTTATTTCGCATCATCTGCGGGTCGAAATT AACTCAGCCAACGATAATCCTTTGATCGACACTGCTAGCGCCGCGAGTTATCATGGTGGCAATTTCTTGGGTCAGTATAT TGGCGTGGGGATGGATCAGCTGCGCTATTATATGGGGCTGATGGCCAAACATCTGGATGTGCAGATTGCGCTGTTAGTTT CACCGCAGTTCAATAATGGTTTGCCAGCTTCGTTGGTTGGCAATATCCAGCGTAAGGTTAATATGGGGTTGAAAGGGCTA CAGCTCACCGCCAACTCGATCATGCCAATCTTGACCTTTTTGGGCAATTCGTTGGCCGATCGTTTTCCAACTCATGCTGA GCAATTTAACCAGAATATCAATAGCCAAGGCTTTGGTTCGGCCAACTTAGCCCGCCAAACAATCCAAACGCTTCAGCAAT ATATTGCGATTACGCTGATGTTTGGGGTGCAAGCGGTGGATTTGCGTACCCACAAATTAGCAGGCCATTACAACGCTGCT GAATTGCTCTCGCCGCTTACCGCAAAGATCTATCACGCCGTTCGTTCAATCGTCAAGCATCCGCCCTCGCCTGAACGCCC TTATATCTGGAATGATGATGAACAAGTGCTCGAAGCGCATATTAGTGCCTTAGCTCATGATATTGCCAACGATGGCTCAT TGGTGAGTGCCGTTGAACAAACGCTGAGCGGCTTGCGCTCAATTATTTTGTTCCGTTAA
Upstream 100 bases:
>100_bases ATTACGTAATTCATAACCAAGAATGCGGCGTAGGGTTTATGCATTGGTTCGGCTTAACATCACCATCGCGATCCATTGAT CTTATGCACTGGAGAAACTT
Downstream 100 bases:
>100_bases ACAATCAATCCCCACATAGTTGATTAACCATGAACTATGTGGGGATTATTATTTAATCGCTAATCGAGCTGGTGCAATGC TTGATTGATATAGGCTGCCA
Product: histidine ammonia-lyase
Products: NA
Alternate protein names: Histidase [H]
Number of amino acids: Translated: 552; Mature: 551
Protein sequence:
>552_residues MSTTLILTGEGLGIDDVVRVARHQDRVELTTDPAILAQIEASCAYINQAVKEHQPVYGVTTGFGGMANVIISPEEAAELQ NNAIWYHKTGAGKLLPFTDVRAAMLLRANSHMRGASGIRLEIIQRMVTFLNANVTPHVREFGSIGASGDLVPLISITGAL LGTDQAFMVDFNGETLDCISALERLGLPRLRLQPKEGLAMMNGTSVMTGIAANCVHDARILLALALEAHALMIQGLQGTN QSFHPFIHRHKPHTGQVWAADHMLELLQGSQLSRNELDGSHDYRDGDLIQDRYSLRCLPQFLGPIIDGMAFISHHLRVEI NSANDNPLIDTASAASYHGGNFLGQYIGVGMDQLRYYMGLMAKHLDVQIALLVSPQFNNGLPASLVGNIQRKVNMGLKGL QLTANSIMPILTFLGNSLADRFPTHAEQFNQNINSQGFGSANLARQTIQTLQQYIAITLMFGVQAVDLRTHKLAGHYNAA ELLSPLTAKIYHAVRSIVKHPPSPERPYIWNDDEQVLEAHISALAHDIANDGSLVSAVEQTLSGLRSIILFR
Sequences:
>Translated_552_residues MSTTLILTGEGLGIDDVVRVARHQDRVELTTDPAILAQIEASCAYINQAVKEHQPVYGVTTGFGGMANVIISPEEAAELQ NNAIWYHKTGAGKLLPFTDVRAAMLLRANSHMRGASGIRLEIIQRMVTFLNANVTPHVREFGSIGASGDLVPLISITGAL LGTDQAFMVDFNGETLDCISALERLGLPRLRLQPKEGLAMMNGTSVMTGIAANCVHDARILLALALEAHALMIQGLQGTN QSFHPFIHRHKPHTGQVWAADHMLELLQGSQLSRNELDGSHDYRDGDLIQDRYSLRCLPQFLGPIIDGMAFISHHLRVEI NSANDNPLIDTASAASYHGGNFLGQYIGVGMDQLRYYMGLMAKHLDVQIALLVSPQFNNGLPASLVGNIQRKVNMGLKGL QLTANSIMPILTFLGNSLADRFPTHAEQFNQNINSQGFGSANLARQTIQTLQQYIAITLMFGVQAVDLRTHKLAGHYNAA ELLSPLTAKIYHAVRSIVKHPPSPERPYIWNDDEQVLEAHISALAHDIANDGSLVSAVEQTLSGLRSIILFR >Mature_551_residues STTLILTGEGLGIDDVVRVARHQDRVELTTDPAILAQIEASCAYINQAVKEHQPVYGVTTGFGGMANVIISPEEAAELQN NAIWYHKTGAGKLLPFTDVRAAMLLRANSHMRGASGIRLEIIQRMVTFLNANVTPHVREFGSIGASGDLVPLISITGALL GTDQAFMVDFNGETLDCISALERLGLPRLRLQPKEGLAMMNGTSVMTGIAANCVHDARILLALALEAHALMIQGLQGTNQ SFHPFIHRHKPHTGQVWAADHMLELLQGSQLSRNELDGSHDYRDGDLIQDRYSLRCLPQFLGPIIDGMAFISHHLRVEIN SANDNPLIDTASAASYHGGNFLGQYIGVGMDQLRYYMGLMAKHLDVQIALLVSPQFNNGLPASLVGNIQRKVNMGLKGLQ LTANSIMPILTFLGNSLADRFPTHAEQFNQNINSQGFGSANLARQTIQTLQQYIAITLMFGVQAVDLRTHKLAGHYNAAE LLSPLTAKIYHAVRSIVKHPPSPERPYIWNDDEQVLEAHISALAHDIANDGSLVSAVEQTLSGLRSIILFR
Specific function: Unknown
COG id: COG2986
COG function: function code E; Histidine ammonia-lyase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PAL/histidase family [H]
Homologues:
Organism=Homo sapiens, GI4504333, Length=505, Percent_Identity=33.0693069306931, Blast_Score=223, Evalue=4e-58, Organism=Caenorhabditis elegans, GI17567831, Length=520, Percent_Identity=32.3076923076923, Blast_Score=211, Evalue=7e-55,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005921 - InterPro: IPR008948 - InterPro: IPR001106 - InterPro: IPR022313 [H]
Pfam domain/function: PF00221 PAL [H]
EC number: =4.3.1.3 [H]
Molecular weight: Translated: 60237; Mature: 60106
Theoretical pI: Translated: 6.65; Mature: 6.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTTLILTGEGLGIDDVVRVARHQDRVELTTDPAILAQIEASCAYINQAVKEHQPVYGVT CCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEE TGFGGMANVIISPEEAAELQNNAIWYHKTGAGKLLPFTDVRAAMLLRANSHMRGASGIRL CCCCCCEEEEECCHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHH EIIQRMVTFLNANVTPHVREFGSIGASGDLVPLISITGALLGTDQAFMVDFNGETLDCIS HHHHHHHHHHCCCCCHHHHHHHCCCCCCCEEHHHHHHHHHHCCCCEEEEEECCCHHHHHH ALERLGLPRLRLQPKEGLAMMNGTSVMTGIAANCVHDARILLALALEAHALMIQGLQGTN HHHHCCCCCEEECCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC QSFHPFIHRHKPHTGQVWAADHMLELLQGSQLSRNELDGSHDYRDGDLIQDRYSLRCLPQ CCCCHHHHCCCCCCCCEEHHHHHHHHHCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHH FLGPIIDGMAFISHHLRVEINSANDNPLIDTASAASYHGGNFLGQYIGVGMDQLRYYMGL HHHHHHHHHHHHHHEEEEEEECCCCCCCEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHH MAKHLDVQIALLVSPQFNNGLPASLVGNIQRKVNMGLKGLQLTANSIMPILTFLGNSLAD HHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHH RFPTHAEQFNQNINSQGFGSANLARQTIQTLQQYIAITLMFGVQAVDLRTHKLAGHYNAA HCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHCCCCCHH ELLSPLTAKIYHAVRSIVKHPPSPERPYIWNDDEQVLEAHISALAHDIANDGSLVSAVEQ HHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHH TLSGLRSIILFR HHHHHHHHHHCC >Mature Secondary Structure STTLILTGEGLGIDDVVRVARHQDRVELTTDPAILAQIEASCAYINQAVKEHQPVYGVT CEEEEEECCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEE TGFGGMANVIISPEEAAELQNNAIWYHKTGAGKLLPFTDVRAAMLLRANSHMRGASGIRL CCCCCCEEEEECCHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHH EIIQRMVTFLNANVTPHVREFGSIGASGDLVPLISITGALLGTDQAFMVDFNGETLDCIS HHHHHHHHHHCCCCCHHHHHHHCCCCCCCEEHHHHHHHHHHCCCCEEEEEECCCHHHHHH ALERLGLPRLRLQPKEGLAMMNGTSVMTGIAANCVHDARILLALALEAHALMIQGLQGTN HHHHCCCCCEEECCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC QSFHPFIHRHKPHTGQVWAADHMLELLQGSQLSRNELDGSHDYRDGDLIQDRYSLRCLPQ CCCCHHHHCCCCCCCCEEHHHHHHHHHCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHH FLGPIIDGMAFISHHLRVEINSANDNPLIDTASAASYHGGNFLGQYIGVGMDQLRYYMGL HHHHHHHHHHHHHHEEEEEEECCCCCCCEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHH MAKHLDVQIALLVSPQFNNGLPASLVGNIQRKVNMGLKGLQLTANSIMPILTFLGNSLAD HHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHH RFPTHAEQFNQNINSQGFGSANLARQTIQTLQQYIAITLMFGVQAVDLRTHKLAGHYNAA HCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHCCCCCHH ELLSPLTAKIYHAVRSIVKHPPSPERPYIWNDDEQVLEAHISALAHDIANDGSLVSAVEQ HHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHH TLSGLRSIILFR HHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11997336 [H]