Click here to switch to the map view.

The map label for this gene is sdhB [H]

Identifier: 159898256

GI number: 159898256

Start: 2017178

End: 2017957

Strand: Reverse

Name: sdhB [H]

Synonym: Haur_1732

Alternate gene names: 159898256

Gene position: 2017957-2017178 (Counterclockwise)

Preceding gene: 159898257

Following gene: 159898254

Centisome position: 31.8

GC content: 52.95

Gene sequence:

>780_bases
ATGAAATTAAAATTGCACATTTGGCGACAAGATAACGCCAAAACAGCGGGCAAAATGGTTAGCTACGATGCCAACCATGT
TAGCCCTGATATGTCATTTCTCGAAATGCTCGATGTGCTCAACCAAGAGTTGATCACCAAGGGCGAAGATCCTGTAGCGT
TCGATCATGACTGCCGCGAAGGCATTTGCGGTGCCTGTTCGATGGTGATCAACGGGATTCCCCACGGGCCACAGCGGGCA
ACCACCACCTGCCAATTGCACATGCGCTCATTCAAAGATGGCGACGAAGTGTATATTGAGCCATGGCGGGCCGAACCCTT
CCCTGTAATCAAAGACTTGGCCGTTGATCGCGCAGCTCTCGACCGAATTATCGCCGCTGGCGGCTTTATCTCGGTTGGCA
CTGGCTCACCACCAGATGGCAACGCGATTCCAATTTCCAAAGAAATTTCTGATTTGGCGATGGATGCAGCGGCCTGTATT
GGCTGTGGCGCATGTGTCGCTGCATGTCCCAACGGCTCGGCGATGTTGTTCACCGCCGCCAAGGTCTCGCACCTGAACTT
GCTACCCCAAGGCGAGCCAGAAAAAGACCAACGGGTGATCAATATGGTAGCCCAAATGGATGCTGAAGGCTTTGGCAATT
GTACCAACTATGCCGAATGCCAAGCAGCCTGCCCCAAGGAAATTAGCATTCAGTTTATCGCTAAGATGAACCGCGACCTC
ATTCGGGCCAAGCTGCGTGAAGGCAACAACGCTGGCTCTGGCAAAACTGGTGGGGCGTAG

Upstream 100 bases:

>100_bases
AAGGGCGTTGGCACCAAACCAACCATGCACAAAGAAGTTCTCGAATTTGAAAACGTTCACCTTTCAACTCGTTCGTACAA
GTAATCGCTGAGGTGCTTCA

Downstream 100 bases:

>100_bases
GATCTAGGGATCGATTGACGGTAAACGGGGATCGAGCTAGCACTAGCTCAATCCCCATTTTGGTTAGCCGCAGTGTGGCG
ATAGAGCTACTTGATTTTTA

Product: succinate dehydrogenase/fumarate reductase iron-sulfur subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MKLKLHIWRQDNAKTAGKMVSYDANHVSPDMSFLEMLDVLNQELITKGEDPVAFDHDCREGICGACSMVINGIPHGPQRA
TTTCQLHMRSFKDGDEVYIEPWRAEPFPVIKDLAVDRAALDRIIAAGGFISVGTGSPPDGNAIPISKEISDLAMDAAACI
GCGACVAACPNGSAMLFTAAKVSHLNLLPQGEPEKDQRVINMVAQMDAEGFGNCTNYAECQAACPKEISIQFIAKMNRDL
IRAKLREGNNAGSGKTGGA

Sequences:

>Translated_259_residues
MKLKLHIWRQDNAKTAGKMVSYDANHVSPDMSFLEMLDVLNQELITKGEDPVAFDHDCREGICGACSMVINGIPHGPQRA
TTTCQLHMRSFKDGDEVYIEPWRAEPFPVIKDLAVDRAALDRIIAAGGFISVGTGSPPDGNAIPISKEISDLAMDAAACI
GCGACVAACPNGSAMLFTAAKVSHLNLLPQGEPEKDQRVINMVAQMDAEGFGNCTNYAECQAACPKEISIQFIAKMNRDL
IRAKLREGNNAGSGKTGGA
>Mature_259_residues
MKLKLHIWRQDNAKTAGKMVSYDANHVSPDMSFLEMLDVLNQELITKGEDPVAFDHDCREGICGACSMVINGIPHGPQRA
TTTCQLHMRSFKDGDEVYIEPWRAEPFPVIKDLAVDRAALDRIIAAGGFISVGTGSPPDGNAIPISKEISDLAMDAAACI
GCGACVAACPNGSAMLFTAAKVSHLNLLPQGEPEKDQRVINMVAQMDAEGFGNCTNYAECQAACPKEISIQFIAKMNRDL
IRAKLREGNNAGSGKTGGA

Specific function: Two Distinct, Membrane-Bound, FAD-Containing Enzymes Are Responsible For The Catalysis Of Fumarate And Succinate Interconversion; The Fumarate Reductase Is Used In Anaerobic Growth, And The Succinate Dehydrogenase Is Used In Aerobic Growth. [C]

COG id: COG0479

COG function: function code C; Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 4Fe-4S ferredoxin-type domain [H]

Homologues:

Organism=Escherichia coli, GI1790596, Length=215, Percent_Identity=26.046511627907, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR012675
- InterPro:   IPR001041
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR004489 [H]

Pfam domain/function: NA

EC number: =1.3.99.1 [H]

Molecular weight: Translated: 27724; Mature: 27724

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: PS00197 2FE2S_FER_1 ; PS51085 2FE2S_FER_2 ; PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.2 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
8.5 %Cys+Met (Translated Protein)
4.2 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
8.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKLHIWRQDNAKTAGKMVSYDANHVSPDMSFLEMLDVLNQELITKGEDPVAFDHDCRE
CEEEEEEEECCCCHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
GICGACSMVINGIPHGPQRATTTCQLHMRSFKDGDEVYIEPWRAEPFPVIKDLAVDRAAL
HHHHHHHHHHCCCCCCCCCCCHHHEEHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
DRIIAAGGFISVGTGSPPDGNAIPISKEISDLAMDAAACIGCGACVAACPNGSAMLFTAA
HHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEH
KVSHLNLLPQGEPEKDQRVINMVAQMDAEGFGNCTNYAECQAACPKEISIQFIAKMNRDL
HHHHEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHH
IRAKLREGNNAGSGKTGGA
HHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MKLKLHIWRQDNAKTAGKMVSYDANHVSPDMSFLEMLDVLNQELITKGEDPVAFDHDCRE
CEEEEEEEECCCCHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
GICGACSMVINGIPHGPQRATTTCQLHMRSFKDGDEVYIEPWRAEPFPVIKDLAVDRAAL
HHHHHHHHHHCCCCCCCCCCCHHHEEHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
DRIIAAGGFISVGTGSPPDGNAIPISKEISDLAMDAAACIGCGACVAACPNGSAMLFTAA
HHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEH
KVSHLNLLPQGEPEKDQRVINMVAQMDAEGFGNCTNYAECQAACPKEISIQFIAKMNRDL
HHHHEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHH
IRAKLREGNNAGSGKTGGA
HHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3027051; 8969504; 9384377; 3114423 [H]