Definition Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome.
Accession NC_009972
Length 6,346,587

Click here to switch to the map view.

The map label for this gene is 159898230

Identifier: 159898230

GI number: 159898230

Start: 1983847

End: 1985733

Strand: Reverse

Name: 159898230

Synonym: Haur_1706

Alternate gene names: NA

Gene position: 1985733-1983847 (Counterclockwise)

Preceding gene: 159898232

Following gene: 159898226

Centisome position: 31.29

GC content: 47.43

Gene sequence:

>1887_bases
ATGTTTTGGCGCAAAATGAGTTTCATTCTCATCAGCAGTTTATGTTTGATTACCTTAATCTTGCCAACCAAACCAAAGCA
AGCTAATGCCAGCAGCGATTTTCAAAATCTGCATTTAATTGTTTCGATCGAATGGCAGCCAGGCCAGCAAGATGCATTAC
GTCAAGCAAATGGCAGCACCTGCGCCGCCTTTAGCCAAGCATCGCTGCAAGAGATTTTAACCACGGCCTTGCAAGAAACC
AGCCAAACCCTGTATCAAGCCACTGATGGCCAAGTTTGGGTTGAGCAATACTCGGTTTACACTAGCGGCGAACATTGGAA
CGATGCCGATATTCGGATTTTGGCCAACAACGATTATCGCCCAACGGCCTTTCTAGGCGGCTTTGAAAAAAGCATTCGCA
CGATCGAAACCCACGATGGCAAAGTTCATTTCGTACCAGCAGCAATTATGCTCGGGCGCTTATGGAATGGCATCAACGCC
CGTTGTGGCTATTGGTCGGAATTAACTGGCAGCCAAACCATGAGCCACGAATTGGGTCACCATATTTTGGGCTTGCACGA
TGGCTATGCGCCCGATGCTGCTAGTGCCAATTATACCTATTGTAGTTCAACCAGTAACGACCTTAGTGCTGAGTTATCGC
ATGATCGTTTGAGCCATAACTCGCTGATGTCGTATCACTATAGCGCCAGCAAATTACGTGGCAATGCAGCCCAGCATTAT
CATTGCGATAATACACCTCAAACCTTGATGTATGCCATGGATGATTGGGAAACGATTCAAACGCTCTATGGTTTAGTGCC
CAGCAATCAGCCAAGCGTGATGGCTCACAATGGCGAGGCCAGCGTTAAATTTATCGCAGCCAATGCCAAGGGCAACACCA
GTCTGGTGCAATTTAGCGGATTAGATGATACACAAGCAATGGGTTTTAGCATCAAAGGTGCTCCCAATAAACCCACCCGG
ATTATCAATCAAGGCTTGTTGAGTGAGGGCGAGCAAGAAGCATGGTATGGAATTAACTTTAGCGATAGCGATCGGGCAAT
TGTGCTGGCCCGCGATTGGAACACCAATTCGGTCACGTCAATCAGCCAAGCGAAGAGCATTCTAAGCCCAACCAGCAGTT
TTACCTTAAGCAATCAACGCTGGGTCGCCGATCTACAAGTCAAACCAAAACTTAATAGTACAAGCACGCTACCCGAAATT
AATGCGATTGAAATTCAGGGCAAAGAATGTGGCGCAGTTCGAGGCAAAAAGGTTAATCTATCGTTTTGTCCAGCTGGGGG
CAACTGTCGCACAGTTGAAAATATTGATATTAGCAGCAGCCGCACGTTTGCTGCAACCTTTGAATTAACCGCTGCTGAAA
TTGCCGGCTTAGCCAGTCATCACAACTATTTGTATGCCTATAGCAGCGAATATCAAACACCAGTTGCCACATGGTATCAA
ATTGCTGGTGGCTTTGGGCCAGCAACTGCCGAAATCCATGCACCATTGGCCGATGGCAATGTTGGCCTCGATCTGCAAGC
TGGCGCAGCAGCAAGCGTCAATGGTTTTACGCTTGAAGTGTATCAACCAGCGCCATTGTGTACCAACTACAACAATTTGC
CCAACTATACGATCAAACAATGGCCAACCTTGATTCAGCCCTATATGATTCGTGATAAGCGGCTGTTGGCTTGGTATAGC
AATCATCCACCGCTCTATGCCCAATTGAGTTACGATCCAAGTCTGTATCGCAACGGCATTCCAGTCGTGTTGGTCTATAA
TCCAGCTAACCCAACCGCTGGCTGGAGTGTTGTGCCGATTGTGGCTCTCAGCCCTGAACTAGGCTATATAACCGTTGATC
TACGCAATTACACTAGCCAAGGCCTGGTATACGCCTTAGCCCAATAA

Upstream 100 bases:

>100_bases
ACCTCCTACGGAAAGAATTAGGCCGTCGGCACGTCATTAATATGCAACGATTGATTTGGTTGTAACGCTCTTTTCAGAAT
TATCTTAAGGAGTCGAGTGT

Downstream 100 bases:

>100_bases
ATACAAAAAGGCCGTGGGTTTGCAATTAACCCACGGCCTTGCTAGTTAATCAATTAGCTCTGGGCGTTTTCCAGCCGCTT
AGCACGAATCAACGAAGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 628; Mature: 628

Protein sequence:

>628_residues
MFWRKMSFILISSLCLITLILPTKPKQANASSDFQNLHLIVSIEWQPGQQDALRQANGSTCAAFSQASLQEILTTALQET
SQTLYQATDGQVWVEQYSVYTSGEHWNDADIRILANNDYRPTAFLGGFEKSIRTIETHDGKVHFVPAAIMLGRLWNGINA
RCGYWSELTGSQTMSHELGHHILGLHDGYAPDAASANYTYCSSTSNDLSAELSHDRLSHNSLMSYHYSASKLRGNAAQHY
HCDNTPQTLMYAMDDWETIQTLYGLVPSNQPSVMAHNGEASVKFIAANAKGNTSLVQFSGLDDTQAMGFSIKGAPNKPTR
IINQGLLSEGEQEAWYGINFSDSDRAIVLARDWNTNSVTSISQAKSILSPTSSFTLSNQRWVADLQVKPKLNSTSTLPEI
NAIEIQGKECGAVRGKKVNLSFCPAGGNCRTVENIDISSSRTFAATFELTAAEIAGLASHHNYLYAYSSEYQTPVATWYQ
IAGGFGPATAEIHAPLADGNVGLDLQAGAAASVNGFTLEVYQPAPLCTNYNNLPNYTIKQWPTLIQPYMIRDKRLLAWYS
NHPPLYAQLSYDPSLYRNGIPVVLVYNPANPTAGWSVVPIVALSPELGYITVDLRNYTSQGLVYALAQ

Sequences:

>Translated_628_residues
MFWRKMSFILISSLCLITLILPTKPKQANASSDFQNLHLIVSIEWQPGQQDALRQANGSTCAAFSQASLQEILTTALQET
SQTLYQATDGQVWVEQYSVYTSGEHWNDADIRILANNDYRPTAFLGGFEKSIRTIETHDGKVHFVPAAIMLGRLWNGINA
RCGYWSELTGSQTMSHELGHHILGLHDGYAPDAASANYTYCSSTSNDLSAELSHDRLSHNSLMSYHYSASKLRGNAAQHY
HCDNTPQTLMYAMDDWETIQTLYGLVPSNQPSVMAHNGEASVKFIAANAKGNTSLVQFSGLDDTQAMGFSIKGAPNKPTR
IINQGLLSEGEQEAWYGINFSDSDRAIVLARDWNTNSVTSISQAKSILSPTSSFTLSNQRWVADLQVKPKLNSTSTLPEI
NAIEIQGKECGAVRGKKVNLSFCPAGGNCRTVENIDISSSRTFAATFELTAAEIAGLASHHNYLYAYSSEYQTPVATWYQ
IAGGFGPATAEIHAPLADGNVGLDLQAGAAASVNGFTLEVYQPAPLCTNYNNLPNYTIKQWPTLIQPYMIRDKRLLAWYS
NHPPLYAQLSYDPSLYRNGIPVVLVYNPANPTAGWSVVPIVALSPELGYITVDLRNYTSQGLVYALAQ
>Mature_628_residues
MFWRKMSFILISSLCLITLILPTKPKQANASSDFQNLHLIVSIEWQPGQQDALRQANGSTCAAFSQASLQEILTTALQET
SQTLYQATDGQVWVEQYSVYTSGEHWNDADIRILANNDYRPTAFLGGFEKSIRTIETHDGKVHFVPAAIMLGRLWNGINA
RCGYWSELTGSQTMSHELGHHILGLHDGYAPDAASANYTYCSSTSNDLSAELSHDRLSHNSLMSYHYSASKLRGNAAQHY
HCDNTPQTLMYAMDDWETIQTLYGLVPSNQPSVMAHNGEASVKFIAANAKGNTSLVQFSGLDDTQAMGFSIKGAPNKPTR
IINQGLLSEGEQEAWYGINFSDSDRAIVLARDWNTNSVTSISQAKSILSPTSSFTLSNQRWVADLQVKPKLNSTSTLPEI
NAIEIQGKECGAVRGKKVNLSFCPAGGNCRTVENIDISSSRTFAATFELTAAEIAGLASHHNYLYAYSSEYQTPVATWYQ
IAGGFGPATAEIHAPLADGNVGLDLQAGAAASVNGFTLEVYQPAPLCTNYNNLPNYTIKQWPTLIQPYMIRDKRLLAWYS
NHPPLYAQLSYDPSLYRNGIPVVLVYNPANPTAGWSVVPIVALSPELGYITVDLRNYTSQGLVYALAQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 68917; Mature: 68917

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFWRKMSFILISSLCLITLILPTKPKQANASSDFQNLHLIVSIEWQPGQQDALRQANGST
CCHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCEEEEEEEEEECCCHHHHHHHCCCCE
CAAFSQASLQEILTTALQETSQTLYQATDGQVWVEQYSVYTSGEHWNDADIRILANNDYR
EEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCEEEEECCCCC
PTAFLGGFEKSIRTIETHDGKVHFVPAAIMLGRLWNGINARCGYWSELTGSQTMSHELGH
CCCEECCHHHHCEEEECCCCEEEEEHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHHCC
HILGLHDGYAPDAASANYTYCSSTSNDLSAELSHDRLSHNSLMSYHYSASKLRGNAAQHY
CEEECCCCCCCCCCCCCEEEECCCCCCCCHHHCHHHCCCCCCEEEEECHHHHCCCCCCEE
HCDNTPQTLMYAMDDWETIQTLYGLVPSNQPSVMAHNGEASVKFIAANAKGNTSLVQFSG
ECCCCCCEEEEECCCHHHHHHHHHCCCCCCCCEEEECCCCEEEEEEECCCCCCEEEEEEC
LDDTQAMGFSIKGAPNKPTRIINQGLLSEGEQEAWYGINFSDSDRAIVLARDWNTNSVTS
CCCCHHCCEEEECCCCCCHHHHHHHHHCCCCCCCEEECCCCCCCCEEEEEECCCCCCCCH
ISQAKSILSPTSSFTLSNQRWVADLQVKPKLNSTSTLPEINAIEIQGKECGAVRGKKVNL
HHHHHHHHCCCCCEEECCCEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCEEEE
SFCPAGGNCRTVENIDISSSRTFAATFELTAAEIAGLASHHNYLYAYSSEYQTPVATWYQ
EECCCCCCCEEEEECCCCCCCEEEEEEEEHHHHHHHHHHCCCEEEEECCCCCCHHHHHHH
IAGGFGPATAEIHAPLADGNVGLDLQAGAAASVNGFTLEVYQPAPLCTNYNNLPNYTIKQ
HHCCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHH
WPTLIQPYMIRDKRLLAWYSNHPPLYAQLSYDPSLYRNGIPVVLVYNPANPTAGWSVVPI
CHHHHCCCEECCCEEEEEECCCCCEEEEECCCHHHHHCCCCEEEEECCCCCCCCCEEEEE
VALSPELGYITVDLRNYTSQGLVYALAQ
EEECCCCCEEEEEECCCCCCCEEEEECC
>Mature Secondary Structure
MFWRKMSFILISSLCLITLILPTKPKQANASSDFQNLHLIVSIEWQPGQQDALRQANGST
CCHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCEEEEEEEEEECCCHHHHHHHCCCCE
CAAFSQASLQEILTTALQETSQTLYQATDGQVWVEQYSVYTSGEHWNDADIRILANNDYR
EEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCEEEEECCCCC
PTAFLGGFEKSIRTIETHDGKVHFVPAAIMLGRLWNGINARCGYWSELTGSQTMSHELGH
CCCEECCHHHHCEEEECCCCEEEEEHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHHCC
HILGLHDGYAPDAASANYTYCSSTSNDLSAELSHDRLSHNSLMSYHYSASKLRGNAAQHY
CEEECCCCCCCCCCCCCEEEECCCCCCCCHHHCHHHCCCCCCEEEEECHHHHCCCCCCEE
HCDNTPQTLMYAMDDWETIQTLYGLVPSNQPSVMAHNGEASVKFIAANAKGNTSLVQFSG
ECCCCCCEEEEECCCHHHHHHHHHCCCCCCCCEEEECCCCEEEEEEECCCCCCEEEEEEC
LDDTQAMGFSIKGAPNKPTRIINQGLLSEGEQEAWYGINFSDSDRAIVLARDWNTNSVTS
CCCCHHCCEEEECCCCCCHHHHHHHHHCCCCCCCEEECCCCCCCCEEEEEECCCCCCCCH
ISQAKSILSPTSSFTLSNQRWVADLQVKPKLNSTSTLPEINAIEIQGKECGAVRGKKVNL
HHHHHHHHCCCCCEEECCCEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCEEEE
SFCPAGGNCRTVENIDISSSRTFAATFELTAAEIAGLASHHNYLYAYSSEYQTPVATWYQ
EECCCCCCCEEEEECCCCCCCEEEEEEEEHHHHHHHHHHCCCEEEEECCCCCCHHHHHHH
IAGGFGPATAEIHAPLADGNVGLDLQAGAAASVNGFTLEVYQPAPLCTNYNNLPNYTIKQ
HHCCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHH
WPTLIQPYMIRDKRLLAWYSNHPPLYAQLSYDPSLYRNGIPVVLVYNPANPTAGWSVVPI
CHHHHCCCEECCCEEEEEECCCCCEEEEECCCHHHHHCCCCEEEEECCCCCCCCCEEEEE
VALSPELGYITVDLRNYTSQGLVYALAQ
EEECCCCCEEEEEECCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA