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The map label for this gene is 159898204

Identifier: 159898204

GI number: 159898204

Start: 1953565

End: 1955271

Strand: Reverse

Name: 159898204

Synonym: Haur_1680

Alternate gene names: NA

Gene position: 1955271-1953565 (Counterclockwise)

Preceding gene: 159898205

Following gene: 159898200

Centisome position: 30.81

GC content: 39.89

Gene sequence:

>1707_bases
ATGGCTAAAATGTATCCTCCAAGCCTTGGTTCAAATAATGAAATCCCTTCATCAGAGCGCCTTTTATACGAAATCTTCCA
GAGTCAACTTGATGCTGATTTTATTGTATTTCACAGTGTTGCTTGGCTTGGACGTGGGGCACGCGGCCAGTTAAGCGATG
GGGAAGCCGATTTCATTATTGTGCATAAAGCGTATGGCATTTTAGTCATTGAAGCCAAAGGCGGTCGAATTCGCTATAAT
GCCAACCTACCAACCGATCAACAATGGCAAACGATTGATCGGTTTGAACAAAAGCATCAACTAAAATGTAGCCCTTTTGA
GCAGGCCAAACGAAGCAAACATGCACTATGGAATAAATTAAAAGAATTACCTCGGTTCAAGCAACCTAAGCTGTTGTTTG
GCCATGCAGTTGCCTTTCCTGATATTACAGCCGACTTCGAAATCTTACCACCAGATACTAACCAATCAACAATTATTGAT
AGCCGTCATCTTACCGCTATCCAACCTAAAATTATCAAGATCTACCAACAATGGCAGGGAAACCAGCGTTTTGAATCCTT
AACTCCTGCAACAGTGGATTTAATTATTCAGTTGTTGGCTCCAGTCATTAGCATTGATATTAGTTTAGGTTCGCGAATCA
ATCAGTATCAAGCCCAATTATTAACGCTTACTCAACAACAATTTCAAACCTTAAATATGTTACGTCGCCAACGCCAAGCG
CTCATTACTGGCTGTGCAGGGAGTGGCAAAACGATGCTTGCGCTCGAAAAAGCTAAACGCTTAGCGACGAACGAAGCAAT
GAATGTTTTACTGCTTTGTTTTAATCGTCGATTGGCGAATCATCTTAAAACTCTCAGTAGTGGGATTCAAAATTTACAAG
TTTATACATTTCATGAGTTTTGCAGTACTATTTGTTCTCAATATCATATCAATAGTAGCAAACCAGCCAATATCGATGAA
AAAACTTATTATCGCTATTTTTTACCTGAACAGGCCTTTTTGGCGAGCGATGATCTTAGTGAAGAAACAAAATTTGATGC
ATTAATTATCGATGAAGGTCAAGATTTTGCTGAAAATTGGTGGGATATTCTCACTATTTTCATAAAGCCAAATCCTATTT
TCTATATTTTTTATGATAACAATCAACGAGTTTATCAAGAAAGTAACACATTTCCAATCAATCAAGACCCATTTTATCTT
GATATTAACTGTCGTAATACTCAAAAAATCCATCGAGCAGTTCGTTATTTTTATCAGGGTAGCGATGCGGAAACCATCTC
TGCCCAAGGCCCAGAAGGAGAAACAATTGAGGTACTATTGTATGAAACACCACAACAAGAACGAGAACTCTTGGGCGAAA
TACTCGGTCGGCTACACAATCAAGAACAAATTTCAGCGAAGCAAATCGTTATTCTCACACCATATAGCCCACAAAATCTC
AATTTAGCCAATACAACAATTGCTGGGTATATTATTAGCGACAAGCCGCGCAACCCCCAACAAATACTGTGTTCTAGCAT
TCAAGGCTATAAAGGGCTTGAGGCTCCGGTCGTTATCTTAGCGGGATTGGATGAGCGGATTGATGCTGGTGAGGTTGAGC
AGCTCCAAACCATTTTGTATATTGCCTGCTCACGGGCAAGCGGTCATTTGATTGTTTTGTTGCCGAAATCGGCCCCAGCT
AAAATTCGGAAAGCTTTTACTGGATAA

Upstream 100 bases:

>100_bases
GTTAGTTCGTTAATCTTTACCCAAAACAAGCTTATCGCGCGGTAAATTCATAGTACAATCAGGATTAGATCCTATGATTG
AGTTGTGAGGAATTAAGCAG

Downstream 100 bases:

>100_bases
CATGCTCGGAGCCAGCCATTGGCTCCGAGCCAGCTTAATTACAAGGCCTCAAATTCCTCTTCGCGTAGTTTTGTCCAAAC
CCAAAATGGTCGTCGTTCAA

Product: NERD domain-containing protein

Products: NA

Alternate protein names: NERD Domain Protein; DNA Helicase II; Nerd Domain Protein; NERD Domain-Contain Protein; Helicase; Nuclease-Related Domain Family

Number of amino acids: Translated: 568; Mature: 567

Protein sequence:

>568_residues
MAKMYPPSLGSNNEIPSSERLLYEIFQSQLDADFIVFHSVAWLGRGARGQLSDGEADFIIVHKAYGILVIEAKGGRIRYN
ANLPTDQQWQTIDRFEQKHQLKCSPFEQAKRSKHALWNKLKELPRFKQPKLLFGHAVAFPDITADFEILPPDTNQSTIID
SRHLTAIQPKIIKIYQQWQGNQRFESLTPATVDLIIQLLAPVISIDISLGSRINQYQAQLLTLTQQQFQTLNMLRRQRQA
LITGCAGSGKTMLALEKAKRLATNEAMNVLLLCFNRRLANHLKTLSSGIQNLQVYTFHEFCSTICSQYHINSSKPANIDE
KTYYRYFLPEQAFLASDDLSEETKFDALIIDEGQDFAENWWDILTIFIKPNPIFYIFYDNNQRVYQESNTFPINQDPFYL
DINCRNTQKIHRAVRYFYQGSDAETISAQGPEGETIEVLLYETPQQERELLGEILGRLHNQEQISAKQIVILTPYSPQNL
NLANTTIAGYIISDKPRNPQQILCSSIQGYKGLEAPVVILAGLDERIDAGEVEQLQTILYIACSRASGHLIVLLPKSAPA
KIRKAFTG

Sequences:

>Translated_568_residues
MAKMYPPSLGSNNEIPSSERLLYEIFQSQLDADFIVFHSVAWLGRGARGQLSDGEADFIIVHKAYGILVIEAKGGRIRYN
ANLPTDQQWQTIDRFEQKHQLKCSPFEQAKRSKHALWNKLKELPRFKQPKLLFGHAVAFPDITADFEILPPDTNQSTIID
SRHLTAIQPKIIKIYQQWQGNQRFESLTPATVDLIIQLLAPVISIDISLGSRINQYQAQLLTLTQQQFQTLNMLRRQRQA
LITGCAGSGKTMLALEKAKRLATNEAMNVLLLCFNRRLANHLKTLSSGIQNLQVYTFHEFCSTICSQYHINSSKPANIDE
KTYYRYFLPEQAFLASDDLSEETKFDALIIDEGQDFAENWWDILTIFIKPNPIFYIFYDNNQRVYQESNTFPINQDPFYL
DINCRNTQKIHRAVRYFYQGSDAETISAQGPEGETIEVLLYETPQQERELLGEILGRLHNQEQISAKQIVILTPYSPQNL
NLANTTIAGYIISDKPRNPQQILCSSIQGYKGLEAPVVILAGLDERIDAGEVEQLQTILYIACSRASGHLIVLLPKSAPA
KIRKAFTG
>Mature_567_residues
AKMYPPSLGSNNEIPSSERLLYEIFQSQLDADFIVFHSVAWLGRGARGQLSDGEADFIIVHKAYGILVIEAKGGRIRYNA
NLPTDQQWQTIDRFEQKHQLKCSPFEQAKRSKHALWNKLKELPRFKQPKLLFGHAVAFPDITADFEILPPDTNQSTIIDS
RHLTAIQPKIIKIYQQWQGNQRFESLTPATVDLIIQLLAPVISIDISLGSRINQYQAQLLTLTQQQFQTLNMLRRQRQAL
ITGCAGSGKTMLALEKAKRLATNEAMNVLLLCFNRRLANHLKTLSSGIQNLQVYTFHEFCSTICSQYHINSSKPANIDEK
TYYRYFLPEQAFLASDDLSEETKFDALIIDEGQDFAENWWDILTIFIKPNPIFYIFYDNNQRVYQESNTFPINQDPFYLD
INCRNTQKIHRAVRYFYQGSDAETISAQGPEGETIEVLLYETPQQERELLGEILGRLHNQEQISAKQIVILTPYSPQNLN
LANTTIAGYIISDKPRNPQQILCSSIQGYKGLEAPVVILAGLDERIDAGEVEQLQTILYIACSRASGHLIVLLPKSAPAK
IRKAFTG

Specific function: Unknown

COG id: COG0210

COG function: function code L; Superfamily I DNA and RNA helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 64620; Mature: 64488

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKMYPPSLGSNNEIPSSERLLYEIFQSQLDADFIVFHSVAWLGRGARGQLSDGEADFII
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEE
VHKAYGILVIEAKGGRIRYNANLPTDQQWQTIDRFEQKHQLKCSPFEQAKRSKHALWNKL
EEEECEEEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
KELPRFKQPKLLFGHAVAFPDITADFEILPPDTNQSTIIDSRHLTAIQPKIIKIYQQWQG
HHCCCCCCCCEEEEEEEECCCCCCCCEEECCCCCCCEEECCCCCCCCCHHHHHHHHHHCC
NQRFESLTPATVDLIIQLLAPVISIDISLGSRINQYQAQLLTLTQQQFQTLNMLRRQRQA
CCCHHHCCHHHHHHHHHHHHHHHEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LITGCAGSGKTMLALEKAKRLATNEAMNVLLLCFNRRLANHLKTLSSGIQNLQVYTFHEF
HEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEHHHH
CSTICSQYHINSSKPANIDEKTYYRYFLPEQAFLASDDLSEETKFDALIIDEGQDFAENW
HHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHCCCCCCCCCCCCCEEEEECCCHHHHHH
WDILTIFIKPNPIFYIFYDNNQRVYQESNTFPINQDPFYLDINCRNTQKIHRAVRYFYQG
EEEEEEEECCCEEEEEEECCCCEEEECCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCC
SDAETISAQGPEGETIEVLLYETPQQERELLGEILGRLHNQEQISAKQIVILTPYSPQNL
CCCCEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCC
NLANTTIAGYIISDKPRNPQQILCSSIQGYKGLEAPVVILAGLDERIDAGEVEQLQTILY
CEECCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHH
IACSRASGHLIVLLPKSAPAKIRKAFTG
HEECCCCCCEEEEECCCCCHHHHHHCCC
>Mature Secondary Structure 
AKMYPPSLGSNNEIPSSERLLYEIFQSQLDADFIVFHSVAWLGRGARGQLSDGEADFII
CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEE
VHKAYGILVIEAKGGRIRYNANLPTDQQWQTIDRFEQKHQLKCSPFEQAKRSKHALWNKL
EEEECEEEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
KELPRFKQPKLLFGHAVAFPDITADFEILPPDTNQSTIIDSRHLTAIQPKIIKIYQQWQG
HHCCCCCCCCEEEEEEEECCCCCCCCEEECCCCCCCEEECCCCCCCCCHHHHHHHHHHCC
NQRFESLTPATVDLIIQLLAPVISIDISLGSRINQYQAQLLTLTQQQFQTLNMLRRQRQA
CCCHHHCCHHHHHHHHHHHHHHHEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LITGCAGSGKTMLALEKAKRLATNEAMNVLLLCFNRRLANHLKTLSSGIQNLQVYTFHEF
HEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEHHHH
CSTICSQYHINSSKPANIDEKTYYRYFLPEQAFLASDDLSEETKFDALIIDEGQDFAENW
HHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHCCCCCCCCCCCCCEEEEECCCHHHHHH
WDILTIFIKPNPIFYIFYDNNQRVYQESNTFPINQDPFYLDINCRNTQKIHRAVRYFYQG
EEEEEEEECCCEEEEEEECCCCEEEECCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCC
SDAETISAQGPEGETIEVLLYETPQQERELLGEILGRLHNQEQISAKQIVILTPYSPQNL
CCCCEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCC
NLANTTIAGYIISDKPRNPQQILCSSIQGYKGLEAPVVILAGLDERIDAGEVEQLQTILY
CEECCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHH
IACSRASGHLIVLLPKSAPAKIRKAFTG
HEECCCCCCEEEEECCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA