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The map label for this gene is yhcF [H]

Identifier: 159898189

GI number: 159898189

Start: 1933110

End: 1933508

Strand: Reverse

Name: yhcF [H]

Synonym: Haur_1665

Alternate gene names: 159898189

Gene position: 1933508-1933110 (Counterclockwise)

Preceding gene: 159898190

Following gene: 159898188

Centisome position: 30.47

GC content: 44.61

Gene sequence:

>399_bases
ATGAACATACACAGTGATTTAAGTATTTCACGCACTGATGGCCGCCCGATGTATCTACAAATTATCGAGCAGATCAAACA
GCGGATCGCGATTGGCGACTGGCCAGCAGGCAGTGAAATTCCCTCAATTCGTCAGCTAGCAATTGATCTACGAATTAGCG
TCATTACGGTCAAGCGAGCATATTTCGAGCTAGAACATGAGGGAATTATTGTGACTCAGCATGGCAAAGGCTCGTTTGTT
GCCACTAATACCCAGCTTAGTCGCCAATTATGGGAGGATGAATTGGATTCGTATCTTGAGCAAGTAGCTCGTTTAGCAGC
ATTATTAGGCTTATCCAACGAACAATTAATCCATCGCTTACAAGCTGCGGCTGCTCAACAACAACAGGAGCTTTTATGA

Upstream 100 bases:

>100_bases
ACTAAATTCGCTGCACACCTCACGCCAACGGCCAGCCTCGCGCTGGTCGTTCCTTTTTTAGCGCTTGACAAACTGAGTAT
ATGCTGTATATACTGTATAT

Downstream 100 bases:

>100_bases
ATACGCATGCCGTCGAGCTACACAAGGTTGGTAAACGCTATAAATATTTCAGCTTAAACGATATTTCGTTGAGCCTACCA
ACTGGCAGTATCACCGGATT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MNIHSDLSISRTDGRPMYLQIIEQIKQRIAIGDWPAGSEIPSIRQLAIDLRISVITVKRAYFELEHEGIIVTQHGKGSFV
ATNTQLSRQLWEDELDSYLEQVARLAALLGLSNEQLIHRLQAAAAQQQQELL

Sequences:

>Translated_132_residues
MNIHSDLSISRTDGRPMYLQIIEQIKQRIAIGDWPAGSEIPSIRQLAIDLRISVITVKRAYFELEHEGIIVTQHGKGSFV
ATNTQLSRQLWEDELDSYLEQVARLAALLGLSNEQLIHRLQAAAAQQQQELL
>Mature_132_residues
MNIHSDLSISRTDGRPMYLQIIEQIKQRIAIGDWPAGSEIPSIRQLAIDLRISVITVKRAYFELEHEGIIVTQHGKGSFV
ATNTQLSRQLWEDELDSYLEQVARLAALLGLSNEQLIHRLQAAAAQQQQELL

Specific function: Unknown

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 14930; Mature: 14930

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIHSDLSISRTDGRPMYLQIIEQIKQRIAIGDWPAGSEIPSIRQLAIDLRISVITVKRA
CCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHEEEHHHH
YFELEHEGIIVTQHGKGSFVATNTQLSRQLWEDELDSYLEQVARLAALLGLSNEQLIHRL
HHEECCCCEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
QAAAAQQQQELL
HHHHHHHHHHCC
>Mature Secondary Structure
MNIHSDLSISRTDGRPMYLQIIEQIKQRIAIGDWPAGSEIPSIRQLAIDLRISVITVKRA
CCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHEEEHHHH
YFELEHEGIIVTQHGKGSFVATNTQLSRQLWEDELDSYLEQVARLAALLGLSNEQLIHRL
HHEECCCCEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
QAAAAQQQQELL
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]