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The map label for this gene is rarD [H]

Identifier: 159898185

GI number: 159898185

Start: 1929522

End: 1930415

Strand: Reverse

Name: rarD [H]

Synonym: Haur_1661

Alternate gene names: 159898185

Gene position: 1930415-1929522 (Counterclockwise)

Preceding gene: 159898187

Following gene: 159898184

Centisome position: 30.42

GC content: 50.89

Gene sequence:

>894_bases
ATGAAACGGGGAATTCTCTACGCTGCCGGGGCTTATGCATGTTGGGGATTTTTCCCGCTCTACTGGAAGTTGTTGAACGG
CATTCCAGCGTTGGAAATTTTGGCGCATCGCATGGCATGGTCGTTGGTGTTTGTGGGTCTGTTGGTAGTTCTTCGCGGCC
AAATGGGCCAATTTTTGCAGGTGTTGCGCAATCGTCGCACAGTGTTAATCTATGCGACCAGCGCTTTTTTGCTCGGCATC
AACTGGTATGTCTACATCTGGGCGGTCAATGCCAACCATGTGGTCGAAAGTAGCCTTGGCTATTTTATCAACCCTTTGGT
CAACGTCGCGCTGGGCATGTTGTTTTTGGGCGAACGCGTGCGACGCTGGCAGGCTATGGCGATTGGTTTGGCCACCATCG
GCGTGGTCTATCTTACCGTGGCATTGGGTGTGTTGCCATGGATCGCCCTAGCCTTGGCGTTTACCTTTGGATTTTATGGC
CTAATTCGCAAAACTGCCGCGTTGGATTCGCTGCAAGGTCTCGCGTTGGAAACAGTCGTCTTTTTCGGGCCAGCGGCGGG
CTATTTGCTCTGGCTCGAAACCCAAGGCAAAGCCGCTTTTGGCCATCAATCGTGGACGGTCAGCTTGATTTTGGCCGGCG
CAGGCATTGTGACAGCGATTCCATTGTTGATGTTTGCCGCTGGTGCACGCCAAATCCCCATGACGACCTTGGGTTTATTG
CAATATATCAATCCAACCATGCAATTCAGCCTTGGTGTGTTGCTCTACCATGAGCCAATCTCAGGCACAAAATTGATTGG
TTTTGCAATTATTTGGATTGCCTTAGCATTGTACAGCTTCGAAAGCTATCTCAATCGTGGTCAAATTGCGAAGCCAGCAG
CTCAGAGCAGTTAA

Upstream 100 bases:

>100_bases
CATAGCATGATTTTGCCAAAAATCAGCGATAATGCAGCAATAAGCAATTATACTCTGGCTGAACCATCAACCACAGTAGG
CTTCAAATGGGAGTGTTGGC

Downstream 100 bases:

>100_bases
TTGGTTGGGAATACCACTGATCGCGTAGCCCTGATTATTATTATTTGTTCAAACCCTAGGCATAGCCTATACTGAATCAC
GGGATCGATTTGGAACATAC

Product: transporter DMT superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MKRGILYAAGAYACWGFFPLYWKLLNGIPALEILAHRMAWSLVFVGLLVVLRGQMGQFLQVLRNRRTVLIYATSAFLLGI
NWYVYIWAVNANHVVESSLGYFINPLVNVALGMLFLGERVRRWQAMAIGLATIGVVYLTVALGVLPWIALALAFTFGFYG
LIRKTAALDSLQGLALETVVFFGPAAGYLLWLETQGKAAFGHQSWTVSLILAGAGIVTAIPLLMFAAGARQIPMTTLGLL
QYINPTMQFSLGVLLYHEPISGTKLIGFAIIWIALALYSFESYLNRGQIAKPAAQSS

Sequences:

>Translated_297_residues
MKRGILYAAGAYACWGFFPLYWKLLNGIPALEILAHRMAWSLVFVGLLVVLRGQMGQFLQVLRNRRTVLIYATSAFLLGI
NWYVYIWAVNANHVVESSLGYFINPLVNVALGMLFLGERVRRWQAMAIGLATIGVVYLTVALGVLPWIALALAFTFGFYG
LIRKTAALDSLQGLALETVVFFGPAAGYLLWLETQGKAAFGHQSWTVSLILAGAGIVTAIPLLMFAAGARQIPMTTLGLL
QYINPTMQFSLGVLLYHEPISGTKLIGFAIIWIALALYSFESYLNRGQIAKPAAQSS
>Mature_297_residues
MKRGILYAAGAYACWGFFPLYWKLLNGIPALEILAHRMAWSLVFVGLLVVLRGQMGQFLQVLRNRRTVLIYATSAFLLGI
NWYVYIWAVNANHVVESSLGYFINPLVNVALGMLFLGERVRRWQAMAIGLATIGVVYLTVALGVLPWIALALAFTFGFYG
LIRKTAALDSLQGLALETVVFFGPAAGYLLWLETQGKAAFGHQSWTVSLILAGAGIVTAIPLLMFAAGARQIPMTTLGLL
QYINPTMQFSLGVLLYHEPISGTKLIGFAIIWIALALYSFESYLNRGQIAKPAAQSS

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=290, Percent_Identity=42.7586206896552, Blast_Score=236, Evalue=2e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32571; Mature: 32571

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRGILYAAGAYACWGFFPLYWKLLNGIPALEILAHRMAWSLVFVGLLVVLRGQMGQFLQ
CCCCEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLRNRRTVLIYATSAFLLGINWYVYIWAVNANHVVESSLGYFINPLVNVALGMLFLGERV
HHHCCCEEEEEEHHHHHHCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRWQAMAIGLATIGVVYLTVALGVLPWIALALAFTFGFYGLIRKTAALDSLQGLALETVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFGPAAGYLLWLETQGKAAFGHQSWTVSLILAGAGIVTAIPLLMFAAGARQIPMTTLGLL
HCCCCCCEEEEEEECCCEECCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHH
QYINPTMQFSLGVLLYHEPISGTKLIGFAIIWIALALYSFESYLNRGQIAKPAAQSS
HHHCHHHHHHHCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MKRGILYAAGAYACWGFFPLYWKLLNGIPALEILAHRMAWSLVFVGLLVVLRGQMGQFLQ
CCCCEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLRNRRTVLIYATSAFLLGINWYVYIWAVNANHVVESSLGYFINPLVNVALGMLFLGERV
HHHCCCEEEEEEHHHHHHCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRWQAMAIGLATIGVVYLTVALGVLPWIALALAFTFGFYGLIRKTAALDSLQGLALETVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFGPAAGYLLWLETQGKAAFGHQSWTVSLILAGAGIVTAIPLLMFAAGARQIPMTTLGLL
HCCCCCCEEEEEEECCCEECCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHHH
QYINPTMQFSLGVLLYHEPISGTKLIGFAIIWIALALYSFESYLNRGQIAKPAAQSS
HHHCHHHHHHHCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA