| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159898172
Identifier: 159898172
GI number: 159898172
Start: 1905573
End: 1908170
Strand: Reverse
Name: 159898172
Synonym: Haur_1648
Alternate gene names: NA
Gene position: 1908170-1905573 (Counterclockwise)
Preceding gene: 159898173
Following gene: 159898171
Centisome position: 30.07
GC content: 50.5
Gene sequence:
>2598_bases ATGTGGCGTTATCTTGCTCTTTTTGGCATTCTTTGTTCGTTCGCCTTCAATCCACCACAGCATGCCTCGGCTCAACCAGC AATTCAAACTCGCGCAACCATCAATGAAACCCCAAACGGTTTGCAAATCGAATGGCAAGCGGCCAAAGCAGTGCGGCCAT TTGCCGTTTTAGTCGCCGATGCTTGGCAATTTCAGCCAACGCTCCAAGCGCTCAGTCTCGATCACCAAAACATCAATCAA CTCGCCGATTTGCCAGCACCAATAATTGTGCTGCGCGAAGGTCGGTTTCGTGGCCAACGCTTGGTCGTACTGCAACCGCA AACGACATTCAACCAACAAGCTATTACCCAAGCCACAGTCTCTGTTAGTAATGCTCAATTGTTGAATGATCCTCATCGCT TGATCGATCAGCCATTTCAATTAACCCAAAGCGTGCCCAGCCCTCAATCAGGCCAAGGCTGGCGTGTTGTTGTCAATCAA GCAGGTATGCAGCAATTAACGGGTGCAAGCTTGGAGCAAGCAGGCATTAACTTAGCCACGCTCGAACGCTATAGCCTGCA ACTGTGGTATAAAAATCAACAATTAGCAATCGAGGAGCAAGGCACGCTCGACGGCAGCTTTGATCGCAACGATGCAATTT GGTTTTATCAACCCAGTGTTGGCGACCGTTGGAATACAACCAGCAGTGTGTGGCTCAAAATCGGGGTCGCCCACAGCAGC CCAAAAATTCAGCAAATCAGCATCGATCCAACTGGCTTGCCAACTAGCAACCAAGCCTACCAAACCAGCACTTGGTATGC CCCAAAAATCTACGATTCCTTGCAGGCTGGCAACGATGGCGACCATTGGTTTAGCGCCGATTTAAAGGCTGGCCCAGATC TCAACCCAATTACCCAGCAGATTTGGCTCACCAGCACCTTGCCACTCGCGACTGGCCCAAGCACAGTTACGCTCAGTGGA ATTGTCTACACTAGCGCCGTCACCAGCGTAGCAATCACCAGCAGCCAACGGATCAATCTTAATTTGAATAGTGGTATTTT TACCAAATCGGCCCAACTTGCCCCAAGCCAAAACCTGCAACTGGCAATCGCCAGCACCCAGCAAATCAGCGGAATTTCGC TTGATCGGCTGGTTTGGCAGCGGCCTGTGCTGCTCAACGCCAACTATCAATCGTTTCAATGGCAAGCATTACGTAAAGCC AATTATCAAATTAGCAACCAACCCAACCAAGCTGTTAGCTATAACGTGAGCAATCCATGGCAACCGCAGCGTATGCAATT TCAAAATAATACGCTGGCCGCCAATCCAGGCGATTATCTGCTGGTCAATCCCACCAACCTTCCACAGCCCAGCATCCAAG CCAGCGCCACCGTTAATTGGGCTACACCTGCCAAAACAATCTATCTTGCACCCAAACAATGGCATAGCCTCGTCCAGCCA TTGATCAATCGTCGCCAGCAGCAGGGTTGGCAGCCTTTGTTGGTCGATGTTCAGGCGATTTATGATCGTTGGAGCAGCGG CAATGTTGATCCGTTGGCGATTCGCGATTTTATGCGCTACCTCGCCAGTACTTGGCCGCAAGCACCTCAATCGTTGGTTT TAGTTGGCGATGGCACGATCGATCCGCTGAATTATCTAGGCCGCAACAACCCCAATATGATTCCACCATTGCCTGCTTAC ACCGACCCATGGCTTGGTGAAATCGCCTGCGACACATGTTTTGTCCAACTTGATGGTGCAAATCCCTTGGACGACCCAAT GCCCGACCTGCAAATTGGCCGCTTACCCGCCAAAACCAGCACCGAAGTCAGCAATTTAATCAACAAAATCAACGCTTACG AAAACGCTCCAGCCGATCTGCGCTGGCGTTCGCGCCAAGTCTATATTGCTGATAATTACAAAACAGCCAATGGTCAGGCC GATTATGCAGGCGATTTTGCCGCATTGAGCGATATCATGCTTAGTTATCAACCAAGTCAGCTCGATATTCAGCGCATCTA TTACGACCCTTGGCGCAAAACCAACAACGGCCTGCCGCAAACTGATCCTTGGCGCATCACCAGCGCCGACCAAGCCCGTC AAAAAACCTTTGAGCAACTTAATCAAGGGGCGGCAGTAGTGACCTACGTTGGCCATAGTCATCAATATCAATGGGCAATT ACCGATTTGAGCAATAACCAGCCCTATCTGTTGAGTTTGTACGATAGCGACCGCTTGCAAAATAGCCCAGCCCTGCCGAT GATCTTGGAGATGACTTGTTTGACTAGCGCCTTTCAGACCCCCGCATGGAGTGGTACGAGCCTTGATGAACGTTTGGTGC TACAACCGCAGGGTGGCGCAATTGCCACCTGGGGTTCAGCGGGCTTAGGCGTGGCCCATGGTCATGATCTGCTCAACGCA GGCTGGTGGCAACGCATGTGGAGCAATCCTAGCCAAACACCGATTGGTACAGGAGTACTAGCAGGCTTATTGCACTTGTT CAGCGATGGTGGCTGTTGCCAAGATAGCCTGCAAAGCTCGATTCTTTTGGGCGATCCCAACATCTTATTACAACACCAAG AGCGCCAAGCTATCTACCTACCAGCAATTATTAAATAA
Upstream 100 bases:
>100_bases TCGAATCTTCGCACCAATGACCACTCGGTAATCGCGTCGGTAAGGGCTGGCTGGCATCATGCTAGTCAGCCCTTGATTTT TACACTGAGGATTGTGGCAT
Downstream 100 bases:
>100_bases TCACATAGCTAAAGAACTAGTGTTATCTAGGACTAATGGGCTACTCTCTTAAACTCCCCTCTTACATCCAACACGACTAA AGAGTAGCTCATATATGCAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 865; Mature: 865
Protein sequence:
>865_residues MWRYLALFGILCSFAFNPPQHASAQPAIQTRATINETPNGLQIEWQAAKAVRPFAVLVADAWQFQPTLQALSLDHQNINQ LADLPAPIIVLREGRFRGQRLVVLQPQTTFNQQAITQATVSVSNAQLLNDPHRLIDQPFQLTQSVPSPQSGQGWRVVVNQ AGMQQLTGASLEQAGINLATLERYSLQLWYKNQQLAIEEQGTLDGSFDRNDAIWFYQPSVGDRWNTTSSVWLKIGVAHSS PKIQQISIDPTGLPTSNQAYQTSTWYAPKIYDSLQAGNDGDHWFSADLKAGPDLNPITQQIWLTSTLPLATGPSTVTLSG IVYTSAVTSVAITSSQRINLNLNSGIFTKSAQLAPSQNLQLAIASTQQISGISLDRLVWQRPVLLNANYQSFQWQALRKA NYQISNQPNQAVSYNVSNPWQPQRMQFQNNTLAANPGDYLLVNPTNLPQPSIQASATVNWATPAKTIYLAPKQWHSLVQP LINRRQQQGWQPLLVDVQAIYDRWSSGNVDPLAIRDFMRYLASTWPQAPQSLVLVGDGTIDPLNYLGRNNPNMIPPLPAY TDPWLGEIACDTCFVQLDGANPLDDPMPDLQIGRLPAKTSTEVSNLINKINAYENAPADLRWRSRQVYIADNYKTANGQA DYAGDFAALSDIMLSYQPSQLDIQRIYYDPWRKTNNGLPQTDPWRITSADQARQKTFEQLNQGAAVVTYVGHSHQYQWAI TDLSNNQPYLLSLYDSDRLQNSPALPMILEMTCLTSAFQTPAWSGTSLDERLVLQPQGGAIATWGSAGLGVAHGHDLLNA GWWQRMWSNPSQTPIGTGVLAGLLHLFSDGGCCQDSLQSSILLGDPNILLQHQERQAIYLPAIIK
Sequences:
>Translated_865_residues MWRYLALFGILCSFAFNPPQHASAQPAIQTRATINETPNGLQIEWQAAKAVRPFAVLVADAWQFQPTLQALSLDHQNINQ LADLPAPIIVLREGRFRGQRLVVLQPQTTFNQQAITQATVSVSNAQLLNDPHRLIDQPFQLTQSVPSPQSGQGWRVVVNQ AGMQQLTGASLEQAGINLATLERYSLQLWYKNQQLAIEEQGTLDGSFDRNDAIWFYQPSVGDRWNTTSSVWLKIGVAHSS PKIQQISIDPTGLPTSNQAYQTSTWYAPKIYDSLQAGNDGDHWFSADLKAGPDLNPITQQIWLTSTLPLATGPSTVTLSG IVYTSAVTSVAITSSQRINLNLNSGIFTKSAQLAPSQNLQLAIASTQQISGISLDRLVWQRPVLLNANYQSFQWQALRKA NYQISNQPNQAVSYNVSNPWQPQRMQFQNNTLAANPGDYLLVNPTNLPQPSIQASATVNWATPAKTIYLAPKQWHSLVQP LINRRQQQGWQPLLVDVQAIYDRWSSGNVDPLAIRDFMRYLASTWPQAPQSLVLVGDGTIDPLNYLGRNNPNMIPPLPAY TDPWLGEIACDTCFVQLDGANPLDDPMPDLQIGRLPAKTSTEVSNLINKINAYENAPADLRWRSRQVYIADNYKTANGQA DYAGDFAALSDIMLSYQPSQLDIQRIYYDPWRKTNNGLPQTDPWRITSADQARQKTFEQLNQGAAVVTYVGHSHQYQWAI TDLSNNQPYLLSLYDSDRLQNSPALPMILEMTCLTSAFQTPAWSGTSLDERLVLQPQGGAIATWGSAGLGVAHGHDLLNA GWWQRMWSNPSQTPIGTGVLAGLLHLFSDGGCCQDSLQSSILLGDPNILLQHQERQAIYLPAIIK >Mature_865_residues MWRYLALFGILCSFAFNPPQHASAQPAIQTRATINETPNGLQIEWQAAKAVRPFAVLVADAWQFQPTLQALSLDHQNINQ LADLPAPIIVLREGRFRGQRLVVLQPQTTFNQQAITQATVSVSNAQLLNDPHRLIDQPFQLTQSVPSPQSGQGWRVVVNQ AGMQQLTGASLEQAGINLATLERYSLQLWYKNQQLAIEEQGTLDGSFDRNDAIWFYQPSVGDRWNTTSSVWLKIGVAHSS PKIQQISIDPTGLPTSNQAYQTSTWYAPKIYDSLQAGNDGDHWFSADLKAGPDLNPITQQIWLTSTLPLATGPSTVTLSG IVYTSAVTSVAITSSQRINLNLNSGIFTKSAQLAPSQNLQLAIASTQQISGISLDRLVWQRPVLLNANYQSFQWQALRKA NYQISNQPNQAVSYNVSNPWQPQRMQFQNNTLAANPGDYLLVNPTNLPQPSIQASATVNWATPAKTIYLAPKQWHSLVQP LINRRQQQGWQPLLVDVQAIYDRWSSGNVDPLAIRDFMRYLASTWPQAPQSLVLVGDGTIDPLNYLGRNNPNMIPPLPAY TDPWLGEIACDTCFVQLDGANPLDDPMPDLQIGRLPAKTSTEVSNLINKINAYENAPADLRWRSRQVYIADNYKTANGQA DYAGDFAALSDIMLSYQPSQLDIQRIYYDPWRKTNNGLPQTDPWRITSADQARQKTFEQLNQGAAVVTYVGHSHQYQWAI TDLSNNQPYLLSLYDSDRLQNSPALPMILEMTCLTSAFQTPAWSGTSLDERLVLQPQGGAIATWGSAGLGVAHGHDLLNA GWWQRMWSNPSQTPIGTGVLAGLLHLFSDGGCCQDSLQSSILLGDPNILLQHQERQAIYLPAIIK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 95935; Mature: 95935
Theoretical pI: Translated: 6.10; Mature: 6.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWRYLALFGILCSFAFNPPQHASAQPAIQTRATINETPNGLQIEWQAAKAVRPFAVLVAD CHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCEECCCCCCCEEEEEECCCCCCCEEEEEEC AWQFQPTLQALSLDHQNINQLADLPAPIIVLREGRFRGQRLVVLQPQTTFNQQAITQATV CCCCCCHHHHHHCCHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHE SVSNAQLLNDPHRLIDQPFQLTQSVPSPQSGQGWRVVVNQAGMQQLTGASLEQAGINLAT EECCHHHHCCCHHHHCCHHHHHHCCCCCCCCCCCEEEEECCCHHHHCCCCHHHCCCCEEE LERYSLQLWYKNQQLAIEEQGTLDGSFDRNDAIWFYQPSVGDRWNTTSSVWLKIGVAHSS EEEEEEEEEEECCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEEEECCC PKIQQISIDPTGLPTSNQAYQTSTWYAPKIYDSLQAGNDGDHWFSADLKAGPDLNPITQQ CCEEEEEECCCCCCCCCCCEECCCEECHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHH IWLTSTLPLATGPSTVTLSGIVYTSAVTSVAITSSQRINLNLNSGIFTKSAQLAPSQNLQ EEEEECCCCCCCCCEEEEEEEEEHHHHHEEEEECCCEEEEEECCCEEECCCCCCCCCCCE LAIASTQQISGISLDRLVWQRPVLLNANYQSFQWQALRKANYQISNQPNQAVSYNVSNPW EEEECCCCCCCCCHHHHHHCCCEEEECCCCCHHHHHHHHCCCEECCCCCCEEEECCCCCC QPQRMQFQNNTLAANPGDYLLVNPTNLPQPSIQASATVNWATPAKTIYLAPKQWHSLVQP CCHHHEECCCEEECCCCCEEEECCCCCCCCCCCCEEEEEECCCCCEEEECHHHHHHHHHH LINRRQQQGWQPLLVDVQAIYDRWSSGNVDPLAIRDFMRYLASTWPQAPQSLVLVGDGTI HHHHHHHCCCCCEEEEHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCC DPLNYLGRNNPNMIPPLPAYTDPWLGEIACDTCFVQLDGANPLDDPMPDLQIGRLPAKTS CHHHHHCCCCCCCCCCCCCCCCCCCHHEEEEEEEEEECCCCCCCCCCCCCEECCCCCCCH TEVSNLINKINAYENAPADLRWRSRQVYIADNYKTANGQADYAGDFAALSDIMLSYQPSQ HHHHHHHHHHHHHCCCCCCCEECCEEEEEEECEEECCCCCCCCCCHHHHHHHHHHCCCCC LDIQRIYYDPWRKTNNGLPQTDPWRITSADQARQKTFEQLNQGAAVVTYVGHSHQYQWAI EEEEEEEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEE TDLSNNQPYLLSLYDSDRLQNSPALPMILEMTCLTSAFQTPAWSGTSLDERLVLQPQGGA EECCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCE IATWGSAGLGVAHGHDLLNAGWWQRMWSNPSQTPIGTGVLAGLLHLFSDGGCCQDSLQSS EEECCCCCCCCCCCCHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHCCE ILLGDPNILLQHQERQAIYLPAIIK EEECCCCEEEEECCCCEEECCEECC >Mature Secondary Structure MWRYLALFGILCSFAFNPPQHASAQPAIQTRATINETPNGLQIEWQAAKAVRPFAVLVAD CHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCEECCCCCCCEEEEEECCCCCCCEEEEEEC AWQFQPTLQALSLDHQNINQLADLPAPIIVLREGRFRGQRLVVLQPQTTFNQQAITQATV CCCCCCHHHHHHCCHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHE SVSNAQLLNDPHRLIDQPFQLTQSVPSPQSGQGWRVVVNQAGMQQLTGASLEQAGINLAT EECCHHHHCCCHHHHCCHHHHHHCCCCCCCCCCCEEEEECCCHHHHCCCCHHHCCCCEEE LERYSLQLWYKNQQLAIEEQGTLDGSFDRNDAIWFYQPSVGDRWNTTSSVWLKIGVAHSS EEEEEEEEEEECCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEEEECCC PKIQQISIDPTGLPTSNQAYQTSTWYAPKIYDSLQAGNDGDHWFSADLKAGPDLNPITQQ CCEEEEEECCCCCCCCCCCEECCCEECHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHH IWLTSTLPLATGPSTVTLSGIVYTSAVTSVAITSSQRINLNLNSGIFTKSAQLAPSQNLQ EEEEECCCCCCCCCEEEEEEEEEHHHHHEEEEECCCEEEEEECCCEEECCCCCCCCCCCE LAIASTQQISGISLDRLVWQRPVLLNANYQSFQWQALRKANYQISNQPNQAVSYNVSNPW EEEECCCCCCCCCHHHHHHCCCEEEECCCCCHHHHHHHHCCCEECCCCCCEEEECCCCCC QPQRMQFQNNTLAANPGDYLLVNPTNLPQPSIQASATVNWATPAKTIYLAPKQWHSLVQP CCHHHEECCCEEECCCCCEEEECCCCCCCCCCCCEEEEEECCCCCEEEECHHHHHHHHHH LINRRQQQGWQPLLVDVQAIYDRWSSGNVDPLAIRDFMRYLASTWPQAPQSLVLVGDGTI HHHHHHHCCCCCEEEEHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCC DPLNYLGRNNPNMIPPLPAYTDPWLGEIACDTCFVQLDGANPLDDPMPDLQIGRLPAKTS CHHHHHCCCCCCCCCCCCCCCCCCCHHEEEEEEEEEECCCCCCCCCCCCCEECCCCCCCH TEVSNLINKINAYENAPADLRWRSRQVYIADNYKTANGQADYAGDFAALSDIMLSYQPSQ HHHHHHHHHHHHHCCCCCCCEECCEEEEEEECEEECCCCCCCCCCHHHHHHHHHHCCCCC LDIQRIYYDPWRKTNNGLPQTDPWRITSADQARQKTFEQLNQGAAVVTYVGHSHQYQWAI EEEEEEEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEE TDLSNNQPYLLSLYDSDRLQNSPALPMILEMTCLTSAFQTPAWSGTSLDERLVLQPQGGA EECCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCE IATWGSAGLGVAHGHDLLNAGWWQRMWSNPSQTPIGTGVLAGLLHLFSDGGCCQDSLQSS EEECCCCCCCCCCCCHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHCCE ILLGDPNILLQHQERQAIYLPAIIK EEECCCCEEEEECCCCEEECCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA