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The map label for this gene is 159898115

Identifier: 159898115

GI number: 159898115

Start: 1844707

End: 1845318

Strand: Reverse

Name: 159898115

Synonym: Haur_1591

Alternate gene names: NA

Gene position: 1845318-1844707 (Counterclockwise)

Preceding gene: 159898120

Following gene: 159898114

Centisome position: 29.08

GC content: 54.58

Gene sequence:

>612_bases
ATGACATGGAACCAATTTGATCGGAGCGGTGTAGAACCTAGTGAAGCCACTCAATCAGGAGCTGCCGTGGAGCAAGCGCC
GCACGCTGATCTCGCCCAAGCATGGGCAACCCACATTCTCGCCCATCAAACGGCGATCTTTCGCTTGGCCTATCTTATGG
TCGGCGATGCGATGATTGCCGAAGATTTAGCGCAGGAAACGCTTATGCGAGCACTCCGCATGCAGCATCGATTTGATCAA
GCGCGACCGTTGAAGCCATGGCTGTTACAAATTACCGCCAATTTGGCCCGCAATTATCGGCGTTCGCTGCGCCGCTATCT
GCGAGCTTTGCAACGGTTCGCCACCCAGCAGCCAGAATTCAGCGAATTCAGCGAAACCAGCGGCCCAGCCTGGGAAGCAA
CCCAACTTTGGCAGGCGATCAGTCGGCTAGCCCAACGCGAACAAGAGGTGATTTACTTACGCTATTTTTTGGAATTAAGC
GAGCAAGAAACCGCCCAAGCGCTTGGTATTGCCCAAGGCACAGTCAAATCGCGATTGCACCGAGCATTGGTGCGGCTACG
CGGTGTTATTGATGGCGAATTTCCTGAGTTGCGGACGGAGCGTTGCGCATGA

Upstream 100 bases:

>100_bases
TGAGCATGCCGAAAAATCCCCATAAAAAACAACTTCTCCCGATTGTACCACTGCCACGGATTGCCAACACGTTCATACTG
CGATCTAAAGATTATGAAAT

Downstream 100 bases:

>100_bases
ACCAGCCACCAGAGCCATATCCAGCAGAAACCTTGCGCGAACAAGCTCAGGCCTTTCCCTATCCGCCAACGCCCAATTTG
CAAATCAAGCAGGTGCGGCG

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma-24 Subunit ECF Subfamily; Sigma-70 Family RNA Polymerase; RNA Polymerase ECF-Type Sigma Factor; Sigma-70 Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MTWNQFDRSGVEPSEATQSGAAVEQAPHADLAQAWATHILAHQTAIFRLAYLMVGDAMIAEDLAQETLMRALRMQHRFDQ
ARPLKPWLLQITANLARNYRRSLRRYLRALQRFATQQPEFSEFSETSGPAWEATQLWQAISRLAQREQEVIYLRYFLELS
EQETAQALGIAQGTVKSRLHRALVRLRGVIDGEFPELRTERCA

Sequences:

>Translated_203_residues
MTWNQFDRSGVEPSEATQSGAAVEQAPHADLAQAWATHILAHQTAIFRLAYLMVGDAMIAEDLAQETLMRALRMQHRFDQ
ARPLKPWLLQITANLARNYRRSLRRYLRALQRFATQQPEFSEFSETSGPAWEATQLWQAISRLAQREQEVIYLRYFLELS
EQETAQALGIAQGTVKSRLHRALVRLRGVIDGEFPELRTERCA
>Mature_202_residues
TWNQFDRSGVEPSEATQSGAAVEQAPHADLAQAWATHILAHQTAIFRLAYLMVGDAMIAEDLAQETLMRALRMQHRFDQA
RPLKPWLLQITANLARNYRRSLRRYLRALQRFATQQPEFSEFSETSGPAWEATQLWQAISRLAQREQEVIYLRYFLELSE
QETAQALGIAQGTVKSRLHRALVRLRGVIDGEFPELRTERCA

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23339; Mature: 23208

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTWNQFDRSGVEPSEATQSGAAVEQAPHADLAQAWATHILAHQTAIFRLAYLMVGDAMIA
CCCCCCCCCCCCHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EDLAQETLMRALRMQHRFDQARPLKPWLLQITANLARNYRRSLRRYLRALQRFATQQPEF
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
SEFSETSGPAWEATQLWQAISRLAQREQEVIYLRYFLELSEQETAQALGIAQGTVKSRLH
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RALVRLRGVIDGEFPELRTERCA
HHHHHHHHHHCCCCHHHHHHCCC
>Mature Secondary Structure 
TWNQFDRSGVEPSEATQSGAAVEQAPHADLAQAWATHILAHQTAIFRLAYLMVGDAMIA
CCCCCCCCCCCHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EDLAQETLMRALRMQHRFDQARPLKPWLLQITANLARNYRRSLRRYLRALQRFATQQPEF
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
SEFSETSGPAWEATQLWQAISRLAQREQEVIYLRYFLELSEQETAQALGIAQGTVKSRLH
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RALVRLRGVIDGEFPELRTERCA
HHHHHHHHHHCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA