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The map label for this gene is bbsG [H]

Identifier: 159898084

GI number: 159898084

Start: 1811404

End: 1812621

Strand: Reverse

Name: bbsG [H]

Synonym: Haur_1560

Alternate gene names: 159898084

Gene position: 1812621-1811404 (Counterclockwise)

Preceding gene: 159898085

Following gene: 159898083

Centisome position: 28.56

GC content: 52.22

Gene sequence:

>1218_bases
ATGGATTTTGCAATTCCCAGTCATATTGCGGCAATGCGCGAACAAATTAGCCAATTTTTGCGCGAAAAGGTCTATCCCAA
CGAGCAAGCATGGTTCGATTACGACGAAAAAGCCTATCCTGCTTGCTCCGAGGATCACCCTGAGATCAAGCAGTTACAAG
CTGAAGTTAAGGAATTGGGTTTGTGGGCGGGCCATTTGCCACGCGAGGCTGGCGGCATGGGCCTCTCAATTATGGAATAT
GGGCTGCTCAACGAAATTATTGGGCGCTCGTATTTTGCCCCGCGCATTTTTGGCTCGAATGCGCCTGATAGTGGCAATGC
CGAAATTCTCTGGCACTACGGCACAGCGGCTCAGCACGAGCACTTTTTTTGGCCCTTGCAACAAGGCGCTGTACGCTCAT
TTTTCAGCATGACCGAGCCAGATGTCAGCGGAGCCGACCCAACCTTGCTCCAGACAACTGCCGAATTAGTTGATGATCAG
TGGGTGATCAACGGGCGCAAGTGGTATAGCACTAATGCCAATGGCGCAGGCTTTGGCATCGTTATGGCCATGACCGACCC
TGATGCTCCGACCCATTTGCGCTATAGCCAAATTATTGTGCCAGCCGAAACCCCTGGCTTAACCCTAGTGCGGCCAATTT
CGGTGATGGGCCATACCACAGGCGGCGGCCACTGGGAAATTGAATATACCGATGTACACGTGCCCGCCGAAAATCTGCTT
GGCAAGCGTGGACAAGGCTTTGCTATCGCCCAAACTCGACTTGGCCCAGGCCGCATTCACCATTGTATGCGCTGGCTTGG
GCAGGCTCAACGAGCGTTCGATTTAATGTGCGAGTATAGCACCAAGCGCGTGGCATTTGGCGGGCCGTTGGCCGATAAGC
AAGTGGTGCAACATTGGATCGCCGAAAGTGCTGCTGAAATTCAAGCTGCTCGCTTGAGTGTGTTGCATGCTGCTTGGCAA
ATTGATCAAGCTGGAGCTAAATCAGCTCGCATCGATATCTCATTAATTAAATTTAGCGTTGCCGCCATGCTGATGAACGT
GCTTGATCGGGCAATTCAAGTTCATGGCGGTTTGGGCGTTTCTGATGATACGCCGCTGGCCTTTATGTGGCGGCAAGGGC
GGGCATCACGCATTTACGATGGGCCAGATGAAGTGCATAAAATGGTCGTAGCCCGTGAAATCTTGAAGCGTTACGGTTAT
CCTGAGCGCAAAGTCTAG

Upstream 100 bases:

>100_bases
CCTCAGCCAACCAGTCGATATTCGGCGCGACTTGTTTGATGTCGATTCAGGGATGTCGTGGGCCAAATAAGGCCCACCCC
ACCAAGGAGCAACGAAGCCC

Downstream 100 bases:

>100_bases
TTTGCGTGTAGTGTCCCGAGGTACAACCCATGGATACGATTCAAGTTCGGCCTGATGAACAGTTGAATGAATCAGCTTTA
GCCGATTATTTATACGATAA

Product: acyl-CoA dehydrogenase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MDFAIPSHIAAMREQISQFLREKVYPNEQAWFDYDEKAYPACSEDHPEIKQLQAEVKELGLWAGHLPREAGGMGLSIMEY
GLLNEIIGRSYFAPRIFGSNAPDSGNAEILWHYGTAAQHEHFFWPLQQGAVRSFFSMTEPDVSGADPTLLQTTAELVDDQ
WVINGRKWYSTNANGAGFGIVMAMTDPDAPTHLRYSQIIVPAETPGLTLVRPISVMGHTTGGGHWEIEYTDVHVPAENLL
GKRGQGFAIAQTRLGPGRIHHCMRWLGQAQRAFDLMCEYSTKRVAFGGPLADKQVVQHWIAESAAEIQAARLSVLHAAWQ
IDQAGAKSARIDISLIKFSVAAMLMNVLDRAIQVHGGLGVSDDTPLAFMWRQGRASRIYDGPDEVHKMVVAREILKRYGY
PERKV

Sequences:

>Translated_405_residues
MDFAIPSHIAAMREQISQFLREKVYPNEQAWFDYDEKAYPACSEDHPEIKQLQAEVKELGLWAGHLPREAGGMGLSIMEY
GLLNEIIGRSYFAPRIFGSNAPDSGNAEILWHYGTAAQHEHFFWPLQQGAVRSFFSMTEPDVSGADPTLLQTTAELVDDQ
WVINGRKWYSTNANGAGFGIVMAMTDPDAPTHLRYSQIIVPAETPGLTLVRPISVMGHTTGGGHWEIEYTDVHVPAENLL
GKRGQGFAIAQTRLGPGRIHHCMRWLGQAQRAFDLMCEYSTKRVAFGGPLADKQVVQHWIAESAAEIQAARLSVLHAAWQ
IDQAGAKSARIDISLIKFSVAAMLMNVLDRAIQVHGGLGVSDDTPLAFMWRQGRASRIYDGPDEVHKMVVAREILKRYGY
PERKV
>Mature_405_residues
MDFAIPSHIAAMREQISQFLREKVYPNEQAWFDYDEKAYPACSEDHPEIKQLQAEVKELGLWAGHLPREAGGMGLSIMEY
GLLNEIIGRSYFAPRIFGSNAPDSGNAEILWHYGTAAQHEHFFWPLQQGAVRSFFSMTEPDVSGADPTLLQTTAELVDDQ
WVINGRKWYSTNANGAGFGIVMAMTDPDAPTHLRYSQIIVPAETPGLTLVRPISVMGHTTGGGHWEIEYTDVHVPAENLL
GKRGQGFAIAQTRLGPGRIHHCMRWLGQAQRAFDLMCEYSTKRVAFGGPLADKQVVQHWIAESAAEIQAARLSVLHAAWQ
IDQAGAKSARIDISLIKFSVAAMLMNVLDRAIQVHGGLGVSDDTPLAFMWRQGRASRIYDGPDEVHKMVVAREILKRYGY
PERKV

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI48976061, Length=396, Percent_Identity=42.1717171717172, Blast_Score=297, Evalue=1e-80,
Organism=Homo sapiens, GI211971008, Length=396, Percent_Identity=42.1717171717172, Blast_Score=297, Evalue=1e-80,
Organism=Homo sapiens, GI38505218, Length=384, Percent_Identity=40.8854166666667, Blast_Score=295, Evalue=6e-80,
Organism=Homo sapiens, GI4557233, Length=374, Percent_Identity=32.0855614973262, Blast_Score=163, Evalue=3e-40,
Organism=Homo sapiens, GI187960098, Length=384, Percent_Identity=28.3854166666667, Blast_Score=152, Evalue=7e-37,
Organism=Homo sapiens, GI4557231, Length=384, Percent_Identity=28.3854166666667, Blast_Score=152, Evalue=7e-37,
Organism=Homo sapiens, GI21361497, Length=342, Percent_Identity=27.4853801169591, Blast_Score=128, Evalue=1e-29,
Organism=Homo sapiens, GI4501859, Length=339, Percent_Identity=29.2035398230088, Blast_Score=126, Evalue=3e-29,
Organism=Homo sapiens, GI7656849, Length=339, Percent_Identity=28.9085545722714, Blast_Score=125, Evalue=1e-28,
Organism=Homo sapiens, GI226958412, Length=383, Percent_Identity=26.8929503916449, Blast_Score=119, Evalue=7e-27,
Organism=Homo sapiens, GI4557235, Length=396, Percent_Identity=26.7676767676768, Blast_Score=113, Evalue=2e-25,
Organism=Homo sapiens, GI76496475, Length=396, Percent_Identity=26.7676767676768, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI226958414, Length=340, Percent_Identity=27.9411764705882, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI4501857, Length=390, Percent_Identity=26.4102564102564, Blast_Score=109, Evalue=5e-24,
Organism=Homo sapiens, GI4503943, Length=360, Percent_Identity=25.5555555555556, Blast_Score=79, Evalue=6e-15,
Organism=Escherichia coli, GI87081958, Length=407, Percent_Identity=26.5356265356265, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1786223, Length=365, Percent_Identity=24.6575342465753, Blast_Score=112, Evalue=6e-26,
Organism=Caenorhabditis elegans, GI17562446, Length=356, Percent_Identity=40.7303370786517, Blast_Score=272, Evalue=2e-73,
Organism=Caenorhabditis elegans, GI17534899, Length=353, Percent_Identity=30.028328611898, Blast_Score=142, Evalue=3e-34,
Organism=Caenorhabditis elegans, GI17570075, Length=408, Percent_Identity=26.4705882352941, Blast_Score=137, Evalue=1e-32,
Organism=Caenorhabditis elegans, GI17569725, Length=343, Percent_Identity=28.5714285714286, Blast_Score=135, Evalue=4e-32,
Organism=Caenorhabditis elegans, GI17533517, Length=385, Percent_Identity=26.4935064935065, Blast_Score=122, Evalue=4e-28,
Organism=Caenorhabditis elegans, GI71985184, Length=385, Percent_Identity=27.012987012987, Blast_Score=117, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17508101, Length=341, Percent_Identity=27.2727272727273, Blast_Score=113, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17551932, Length=389, Percent_Identity=25.4498714652956, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17506239, Length=344, Percent_Identity=27.0348837209302, Blast_Score=107, Evalue=9e-24,
Organism=Caenorhabditis elegans, GI17538396, Length=399, Percent_Identity=23.8095238095238, Blast_Score=105, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17505929, Length=390, Percent_Identity=24.6153846153846, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI71990804, Length=274, Percent_Identity=29.1970802919708, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI71985192, Length=288, Percent_Identity=27.4305555555556, Blast_Score=88, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17534353, Length=302, Percent_Identity=26.158940397351, Blast_Score=83, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI71982178, Length=244, Percent_Identity=28.2786885245902, Blast_Score=76, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI32563615, Length=233, Percent_Identity=27.0386266094421, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24646207, Length=365, Percent_Identity=32.3287671232877, Blast_Score=168, Evalue=6e-42,
Organism=Drosophila melanogaster, GI21356377, Length=353, Percent_Identity=33.7110481586402, Blast_Score=165, Evalue=4e-41,
Organism=Drosophila melanogaster, GI24660351, Length=396, Percent_Identity=29.7979797979798, Blast_Score=152, Evalue=3e-37,
Organism=Drosophila melanogaster, GI24666513, Length=387, Percent_Identity=27.390180878553, Blast_Score=129, Evalue=3e-30,
Organism=Drosophila melanogaster, GI281363737, Length=340, Percent_Identity=29.1176470588235, Blast_Score=120, Evalue=2e-27,
Organism=Drosophila melanogaster, GI21355753, Length=330, Percent_Identity=25.1515151515152, Blast_Score=93, Evalue=3e-19,
Organism=Drosophila melanogaster, GI19920834, Length=353, Percent_Identity=24.929178470255, Blast_Score=77, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: =1.3.99.21 [H]

Molecular weight: Translated: 45096; Mature: 45096

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFAIPSHIAAMREQISQFLREKVYPNEQAWFDYDEKAYPACSEDHPEIKQLQAEVKELG
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
LWAGHLPREAGGMGLSIMEYGLLNEIIGRSYFAPRIFGSNAPDSGNAEILWHYGTAAQHE
HHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
HFFWPLQQGAVRSFFSMTEPDVSGADPTLLQTTAELVDDQWVINGRKWYSTNANGAGFGI
CEECCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEECCCEEECCCCCCCCEEE
VMAMTDPDAPTHLRYSQIIVPAETPGLTLVRPISVMGHTTGGGHWEIEYTDVHVPAENLL
EEEEECCCCCCCEEEEEEEEECCCCCCEEEEEHHHHCCCCCCCEEEEEEEEEECCHHHHC
GKRGQGFAIAQTRLGPGRIHHCMRWLGQAQRAFDLMCEYSTKRVAFGGPLADKQVVQHWI
CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH
AESAAEIQAARLSVLHAAWQIDQAGAKSARIDISLIKFSVAAMLMNVLDRAIQVHGGLGV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SDDTPLAFMWRQGRASRIYDGPDEVHKMVVAREILKRYGYPERKV
CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MDFAIPSHIAAMREQISQFLREKVYPNEQAWFDYDEKAYPACSEDHPEIKQLQAEVKELG
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
LWAGHLPREAGGMGLSIMEYGLLNEIIGRSYFAPRIFGSNAPDSGNAEILWHYGTAAQHE
HHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
HFFWPLQQGAVRSFFSMTEPDVSGADPTLLQTTAELVDDQWVINGRKWYSTNANGAGFGI
CEECCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEECCCEEECCCCCCCCEEE
VMAMTDPDAPTHLRYSQIIVPAETPGLTLVRPISVMGHTTGGGHWEIEYTDVHVPAENLL
EEEEECCCCCCCEEEEEEEEECCCCCCEEEEEHHHHCCCCCCCEEEEEEEEEECCHHHHC
GKRGQGFAIAQTRLGPGRIHHCMRWLGQAQRAFDLMCEYSTKRVAFGGPLADKQVVQHWI
CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH
AESAAEIQAARLSVLHAAWQIDQAGAKSARIDISLIKFSVAAMLMNVLDRAIQVHGGLGV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SDDTPLAFMWRQGRASRIYDGPDEVHKMVVAREILKRYGYPERKV
CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10629170; 12420174 [H]