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The map label for this gene is 159898058

Identifier: 159898058

GI number: 159898058

Start: 1786658

End: 1787437

Strand: Reverse

Name: 159898058

Synonym: Haur_1533

Alternate gene names: NA

Gene position: 1787437-1786658 (Counterclockwise)

Preceding gene: 159898059

Following gene: 159898057

Centisome position: 28.16

GC content: 48.85

Gene sequence:

>780_bases
ATGTTCGAGACCCAATTATCTGATAGCGAGCAGCTCTATACCGAACGTGCAACTCTTCTCATCAAAAAATATGGATGGAC
ACTGCTCTCAATCGACGAGCTGGTACAACGAACTGTGCGCCGTCGCGCGACCGATTTTCAAGGAACCCTTGATCAAGCCT
TGATCTGTACCTACATGGTGTCGTTATACGATGCCTGTTCTGGACGCGAAGGGCTAAGTCGGCGCGAGGATGGCTATACG
GAGCTTTTCCGCATGGTCTATAGCTATGCCATGCTTAAACGTTTTGAACCAGCCGAGGAAATCGCCCAAGCTACGATCGA
ACGTGTCCTCAAACATTTTGACGATTGCCGCAAGCCTGGCGCATTTTGGGAGTTTGTGCGTTTACAAATGAACAATGCCT
TGCGCAGCTTACGCCGTTGGACAAAATATCCCGCTGATTCATTAGATCAACCGAGTATGAATGATGAGGGTCAAAACCGT
TACGATGTGTTGGAAGACACCCAAAGCATCGCTCCCGCAACGGTGGTGATTCAACATGAAACCAAGGAGCGAATCTCAGC
CTGTTTAAATGCATATCTACGTGAACACCCACGTTCACACAATCAATTAGCCGCATTGTGGCTCAAATATATTACTGGCC
TTGATGACAATGCGATTAGCCGGACGTTGGAAACTACCGTAAGCCATGTGCATACCCTGCGCAGCCGAGCAATCAAGCGG
TTGCGTGACGATCCACGCTGGCAAGCTGTTGCCACTGATCTAGGGATTGCTTACGAATAA

Upstream 100 bases:

>100_bases
TTGGCAAAGCCTAAAGTGTAAGCGGCCATTGTTCGTTTGACCATTGTAAAATGTTTACGATGCTTCTCAAAGCATCCGCC
TGAAAGCAAAGGTGCGCACC

Downstream 100 bases:

>100_bases
CTATTTTGGTGAGGAACTACCATGAACACGCCACTTCCGACCGCATCTCACGAGATTATGCGTCAACGTCTTGTTGAGTA
TGCCCATGCTGTTGCGCTCG

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MFETQLSDSEQLYTERATLLIKKYGWTLLSIDELVQRTVRRRATDFQGTLDQALICTYMVSLYDACSGREGLSRREDGYT
ELFRMVYSYAMLKRFEPAEEIAQATIERVLKHFDDCRKPGAFWEFVRLQMNNALRSLRRWTKYPADSLDQPSMNDEGQNR
YDVLEDTQSIAPATVVIQHETKERISACLNAYLREHPRSHNQLAALWLKYITGLDDNAISRTLETTVSHVHTLRSRAIKR
LRDDPRWQAVATDLGIAYE

Sequences:

>Translated_259_residues
MFETQLSDSEQLYTERATLLIKKYGWTLLSIDELVQRTVRRRATDFQGTLDQALICTYMVSLYDACSGREGLSRREDGYT
ELFRMVYSYAMLKRFEPAEEIAQATIERVLKHFDDCRKPGAFWEFVRLQMNNALRSLRRWTKYPADSLDQPSMNDEGQNR
YDVLEDTQSIAPATVVIQHETKERISACLNAYLREHPRSHNQLAALWLKYITGLDDNAISRTLETTVSHVHTLRSRAIKR
LRDDPRWQAVATDLGIAYE
>Mature_259_residues
MFETQLSDSEQLYTERATLLIKKYGWTLLSIDELVQRTVRRRATDFQGTLDQALICTYMVSLYDACSGREGLSRREDGYT
ELFRMVYSYAMLKRFEPAEEIAQATIERVLKHFDDCRKPGAFWEFVRLQMNNALRSLRRWTKYPADSLDQPSMNDEGQNR
YDVLEDTQSIAPATVVIQHETKERISACLNAYLREHPRSHNQLAALWLKYITGLDDNAISRTLETTVSHVHTLRSRAIKR
LRDDPRWQAVATDLGIAYE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30165; Mature: 30165

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFETQLSDSEQLYTERATLLIKKYGWTLLSIDELVQRTVRRRATDFQGTLDQALICTYMV
CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLYDACSGREGLSRREDGYTELFRMVYSYAMLKRFEPAEEIAQATIERVLKHFDDCRKPG
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
AFWEFVRLQMNNALRSLRRWTKYPADSLDQPSMNDEGQNRYDVLEDTQSIAPATVVIQHE
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHEEEECH
TKERISACLNAYLREHPRSHNQLAALWLKYITGLDDNAISRTLETTVSHVHTLRSRAIKR
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LRDDPRWQAVATDLGIAYE
HHCCCHHHHHHHHHCCCCC
>Mature Secondary Structure
MFETQLSDSEQLYTERATLLIKKYGWTLLSIDELVQRTVRRRATDFQGTLDQALICTYMV
CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLYDACSGREGLSRREDGYTELFRMVYSYAMLKRFEPAEEIAQATIERVLKHFDDCRKPG
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
AFWEFVRLQMNNALRSLRRWTKYPADSLDQPSMNDEGQNRYDVLEDTQSIAPATVVIQHE
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHEEEECH
TKERISACLNAYLREHPRSHNQLAALWLKYITGLDDNAISRTLETTVSHVHTLRSRAIKR
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LRDDPRWQAVATDLGIAYE
HHCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA