| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159897986
Identifier: 159897986
GI number: 159897986
Start: 1703461
End: 1704681
Strand: Reverse
Name: 159897986
Synonym: Haur_1461
Alternate gene names: NA
Gene position: 1704681-1703461 (Counterclockwise)
Preceding gene: 159897991
Following gene: 159897985
Centisome position: 26.86
GC content: 50.53
Gene sequence:
>1221_bases ATGGAAGGAGTGCCAGCAATTGATCCACGGCTCAATCTGACCCAACGGGGCGGGGTTATCACGATTGGCAATACGCTAGG CCATGATTGTGCGGCGGGCGTTCCCGCTCCAATAGTGGGTGCAGTTGGTACGTGTGGTACAAATACGAGCGATTCAGGCG TTGACATTTATTGGCGAGCCGATTCGCCTGCTGTCAGCCAAGCTGAAGCGAATACCAGCCTCAATAATGCCCAGGCTCGC AGTAGTGCAATGCTCAATATTCCGGTCGGGGCCAGCGTAACCCATGCCTACCTCTATTGGGGAGCGCGTTGGGGTGGCGT AACACCAACTGGTGCTACGCTTGAATTTAATTGGGGCAATAGCCAGAACGTCACACCCATCAGTACAGTTATCAATCCAA ATTCATTTTATCAAGCGGTCGCAGATGTTACCAGCTATGTTCAAACGCATGGCTCCGGAGCCTATCGTGCCAGTGGCATT CTCGCTAATCCGTTTATTAACACCAATGATACTAACGCCTTTGCCGCTTGGTGGTTGGTAGTGGTCTATGCTGATGCAAG CCAACCCAATCGAACGATCATTCTCCACGATGGGCTGGATCAAGTATTAATTGGCAGCTCAATTACCAATACATTGAGTG GATTCAATATTCCCAGCAGCAGCACAACCAACCTTACGATTGTGGGCTACGAGGGAGATAACTCAAGCGCCGGTGACCAA TTGCTGTTTAATGGTAATAGCGTTAGCAATGCGCAAAACCCTACCGATAATATGATGAATAGCACTCGTTCATATTTAGG CAACCCAGTTTCAAGCGCAGGCGATTTGCCACAACTAACCGGAGCAGCCAACAGTATGGGTGGGTTTGACCTTGATACCT TTGATGTTTCAGCATGGACTAGCCCAGGCCAAACCACAGCTAGCATAACCACTGGCTCCACTAGCGATATGTATTTCGTT GGGGGCTTGATTTTAGCGATCACTTCGTTGGTTGCCGATACTCCAACGCCCAGTAACACCCCAACCAACACCCCGACGAA TACTTCTACTGCAACGAACACGCCGACCAACACACCAACGAATACCGCAACCAACACGCCGACCAATACCGCGACCGCAA CGAGTAGCCCAACCAATACTCCAACCAGCACAGCGACCAATACTCCCACACCAAGCCTATGGCGAACCTTCTTGCCAATC GCAATTCGCTCAGCTGAATAA
Upstream 100 bases:
>100_bases AACTCAATATTCATCAAATCGATTCATTCGGCTGATTGGCGGCTTGTTACTACTTAGTACGTTTGGGCTAACGAGCAGTT TACTCAAGCCTTCGGCAGCA
Downstream 100 bases:
>100_bases GTATATTGAAGCTAAAAGCCAACAGCCGAGGCAAAACCTCGGCTGTTGTGGTTAACAGCGTTAGCTCAAAAATTCAGCTA GCGCTGTTCGATCATGTCCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 406; Mature: 406
Protein sequence:
>406_residues MEGVPAIDPRLNLTQRGGVITIGNTLGHDCAAGVPAPIVGAVGTCGTNTSDSGVDIYWRADSPAVSQAEANTSLNNAQAR SSAMLNIPVGASVTHAYLYWGARWGGVTPTGATLEFNWGNSQNVTPISTVINPNSFYQAVADVTSYVQTHGSGAYRASGI LANPFINTNDTNAFAAWWLVVVYADASQPNRTIILHDGLDQVLIGSSITNTLSGFNIPSSSTTNLTIVGYEGDNSSAGDQ LLFNGNSVSNAQNPTDNMMNSTRSYLGNPVSSAGDLPQLTGAANSMGGFDLDTFDVSAWTSPGQTTASITTGSTSDMYFV GGLILAITSLVADTPTPSNTPTNTPTNTSTATNTPTNTPTNTATNTPTNTATATSSPTNTPTSTATNTPTPSLWRTFLPI AIRSAE
Sequences:
>Translated_406_residues MEGVPAIDPRLNLTQRGGVITIGNTLGHDCAAGVPAPIVGAVGTCGTNTSDSGVDIYWRADSPAVSQAEANTSLNNAQAR SSAMLNIPVGASVTHAYLYWGARWGGVTPTGATLEFNWGNSQNVTPISTVINPNSFYQAVADVTSYVQTHGSGAYRASGI LANPFINTNDTNAFAAWWLVVVYADASQPNRTIILHDGLDQVLIGSSITNTLSGFNIPSSSTTNLTIVGYEGDNSSAGDQ LLFNGNSVSNAQNPTDNMMNSTRSYLGNPVSSAGDLPQLTGAANSMGGFDLDTFDVSAWTSPGQTTASITTGSTSDMYFV GGLILAITSLVADTPTPSNTPTNTPTNTSTATNTPTNTPTNTATNTPTNTATATSSPTNTPTSTATNTPTPSLWRTFLPI AIRSAE >Mature_406_residues MEGVPAIDPRLNLTQRGGVITIGNTLGHDCAAGVPAPIVGAVGTCGTNTSDSGVDIYWRADSPAVSQAEANTSLNNAQAR SSAMLNIPVGASVTHAYLYWGARWGGVTPTGATLEFNWGNSQNVTPISTVINPNSFYQAVADVTSYVQTHGSGAYRASGI LANPFINTNDTNAFAAWWLVVVYADASQPNRTIILHDGLDQVLIGSSITNTLSGFNIPSSSTTNLTIVGYEGDNSSAGDQ LLFNGNSVSNAQNPTDNMMNSTRSYLGNPVSSAGDLPQLTGAANSMGGFDLDTFDVSAWTSPGQTTASITTGSTSDMYFV GGLILAITSLVADTPTPSNTPTNTPTNTSTATNTPTNTPTNTATNTPTNTATATSSPTNTPTSTATNTPTPSLWRTFLPI AIRSAE
Specific function: Unknown
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41933; Mature: 41933
Theoretical pI: Translated: 4.11; Mature: 4.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEGVPAIDPRLNLTQRGGVITIGNTLGHDCAAGVPAPIVGAVGTCGTNTSDSGVDIYWRA CCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCHHHHHCCCCCCCCCCCCCEEEEEEC DSPAVSQAEANTSLNNAQARSSAMLNIPVGASVTHAYLYWGARWGGVTPTGATLEFNWGN CCCCCHHHHCCCCCCCHHHHCCEEEEECCCCCCEEEEEEEECEECCCCCCCCEEEECCCC SQNVTPISTVINPNSFYQAVADVTSYVQTHGSGAYRASGILANPFINTNDTNAFAAWWLV CCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCEEECCEEECCEECCCCCCHHHEEEEE VVYADASQPNRTIILHDGLDQVLIGSSITNTLSGFNIPSSSTTNLTIVGYEGDNSSAGDQ EEEECCCCCCCEEEEECCCCHHHHCCHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCE LLFNGNSVSNAQNPTDNMMNSTRSYLGNPVSSAGDLPQLTGAANSMGGFDLDTFDVSAWT EEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCEEEEEEEC SPGQTTASITTGSTSDMYFVGGLILAITSLVADTPTPSNTPTNTPTNTSTATNTPTNTPT CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC NTATNTPTNTATATSSPTNTPTSTATNTPTPSLWRTFLPIAIRSAE CCCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHEEEECCC >Mature Secondary Structure MEGVPAIDPRLNLTQRGGVITIGNTLGHDCAAGVPAPIVGAVGTCGTNTSDSGVDIYWRA CCCCCCCCCCCCEECCCCEEEECCCCCCHHHCCCCHHHHHCCCCCCCCCCCCCEEEEEEC DSPAVSQAEANTSLNNAQARSSAMLNIPVGASVTHAYLYWGARWGGVTPTGATLEFNWGN CCCCCHHHHCCCCCCCHHHHCCEEEEECCCCCCEEEEEEEECEECCCCCCCCEEEECCCC SQNVTPISTVINPNSFYQAVADVTSYVQTHGSGAYRASGILANPFINTNDTNAFAAWWLV CCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCEEECCEEECCEECCCCCCHHHEEEEE VVYADASQPNRTIILHDGLDQVLIGSSITNTLSGFNIPSSSTTNLTIVGYEGDNSSAGDQ EEEECCCCCCCEEEEECCCCHHHHCCHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCE LLFNGNSVSNAQNPTDNMMNSTRSYLGNPVSSAGDLPQLTGAANSMGGFDLDTFDVSAWT EEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCEEEEEEEC SPGQTTASITTGSTSDMYFVGGLILAITSLVADTPTPSNTPTNTPTNTSTATNTPTNTPT CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC NTATNTPTNTATATSSPTNTPTSTATNTPTPSLWRTFLPIAIRSAE CCCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA